FFCP PHASE1:Hg19::chrX:134232704..134232705,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=644596 | |EntrezGene=644596 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=34500 | |HGNC=34500 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_NR_024493,uc004eyh.2_5end | |association_with_transcript=27bp_to_NR_024493,uc004eyh.2_5end | ||
|cluster_id=chrX:134232704..134232705,- | |||
|description=CAGE_peak_4_at_LINC00087_5end | |description=CAGE_peak_4_at_LINC00087_5end | ||
|id=chrX:134232704..134232705,- | |id=chrX:134232704..134232705,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.29e-44!57;UBERON:0005068!8.29e-44!57;UBERON:0006241!8.29e-44!57;UBERON:0007135!8.29e-44!57;UBERON:0005743!1.64e-38!86;UBERON:0002616!1.26e-35!59;UBERON:0001017!2.13e-35!82;UBERON:0000073!3.29e-34!94;UBERON:0001016!3.29e-34!94;UBERON:0000955!3.33e-34!69;UBERON:0006238!3.33e-34!69;UBERON:0003075!4.85e-34!86;UBERON:0007284!4.85e-34!86;UBERON:0002780!1.68e-33!41;UBERON:0001890!1.68e-33!41;UBERON:0006240!1.68e-33!41;UBERON:0002020!4.72e-33!34;UBERON:0003528!4.72e-33!34;UBERON:0001893!6.48e-33!34;UBERON:0003080!1.33e-32!42;UBERON:0002346!3.23e-32!90;UBERON:0001869!2.43e-31!32;UBERON:0002791!2.76e-30!33;UBERON:0007023!7.07e-30!115;UBERON:0003056!8.78e-26!61;UBERON:0002619!3.47e-23!22;UBERON:0000153!1.41e-21!129;UBERON:0007811!1.41e-21!129;UBERON:0001950!2.22e-21!20;UBERON:0000033!2.98e-21!123;UBERON:0000956!3.41e-20!25;UBERON:0000203!3.41e-20!25;UBERON:0000200!9.58e-17!6;UBERON:0004121!6.46e-16!169;UBERON:0000924!2.21e-15!173;UBERON:0006601!2.21e-15!173;UBERON:0002308!3.50e-15!9;UBERON:0000125!3.50e-15!9;UBERON:0000988!9.91e-13!3;UBERON:0002298!3.42e-12!8;UBERON:0003076!4.93e-12!15;UBERON:0003057!4.93e-12!15;UBERON:0000369!1.40e-09!4;UBERON:0002435!1.40e-09!4;UBERON:0000204!1.40e-09!4;UBERON:0010082!1.40e-09!4;UBERON:0000025!2.46e-09!194;UBERON:0001870!3.20e-09!2;UBERON:0009663!3.37e-09!7;UBERON:0002148!9.04e-09!2;UBERON:0009662!9.04e-09!2;UBERON:0004733!5.04e-08!12;UBERON:0002028!5.04e-08!12;UBERON:0007277!5.04e-08!12;UBERON:0001872!5.11e-08!5;UBERON:0004732!2.21e-07!13;UBERON:0002420!3.68e-07!9;UBERON:0007245!3.68e-07!9;UBERON:0010009!3.68e-07!9;UBERON:0010011!3.68e-07!9;UBERON:0000454!3.68e-07!9;UBERON:0004111!5.64e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0001897;3.52e-50;2!UBERON:0002702;3.52e-50;2!UBERON:0010225;3.52e-50;2!UBERON:0001870;5.04e-34;3!UBERON:0002784;6.30e-26;4!UBERON:0000200;8.34e-18;6!UBERON:0001894;1.78e-15;7!UBERON:0000073;3.42e-07;53!UBERON:0002616;3.42e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002702,2.74e-50,2;UBERON:0001897,4.52e-50,2;UBERON:0010225,4.52e-50,2;UBERON:0001870,4.27e-34,3;UBERON:0002784,7.14e-26,4;UBERON:0000200,7.67e-18,6;UBERON:0001894,1.91e-15,7;UBERON:0006222,1.91e-15,7;UBERON:0002780,1.07e-10,41;UBERON:0001890,1.07e-10,41;UBERON:0003080,1.07e-10,41;UBERON:0006240,1.07e-10,41;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0003056,1.20e-07,61;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68 | |||
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| ||
|short_description=p4@LINC00087 | |short_description=p4@LINC00087 | ||
}} | }} |
Latest revision as of 13:28, 19 September 2015
Short description: | p4@LINC00087 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LINC00087_5end |
Coexpression cluster: | NA |
Association with transcript: | 27bp_to_NR_024493, uc004eyh.2_5end |
EntrezGene: | LINC00087 |
HGNC: | 34500 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle frontal gyrus | 2.74e-50 | 2 |
dorsal plus ventral thalamus | 4.52e-50 | 2 |
thalamic complex | 4.52e-50 | 2 |
frontal cortex | 4.27e-34 | 3 |
regional part of diencephalon | 7.14e-26 | 4 |
gyrus | 7.67e-18 | 6 |
diencephalon | 1.91e-15 | 7 |
future diencephalon | 1.91e-15 | 7 |
regional part of forebrain | 1.07e-10 | 41 |
forebrain | 1.07e-10 | 41 |
anterior neural tube | 1.07e-10 | 41 |
future forebrain | 1.07e-10 | 41 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
pre-chordal neural plate | 1.20e-07 | 61 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |