FFCP PHASE1:Hg19::chr12:57623963..57623989,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_ENST00000557302_5end | |association_with_transcript=9bp_to_ENST00000557302_5end | ||
|cluster_id=chr12:57623963..57623989,+ | |||
|coexpression_cluster_id=C2221 | |||
|description=CAGE_peak_4_at_SHMT2_5end | |description=CAGE_peak_4_at_SHMT2_5end | ||
|id=chr12:57623963..57623989,+ | |id=chr12:57623963..57623989,+ | ||
|ontology_enrichment_celltype=CL:0000548!1.86e-30!679;CL:0000004!1.86e-30!679;CL:0000255!1.86e-30!679;CL:0000012!3.37e-29!682;CL:0000144!5.57e-21!625;CL:0002371!3.19e-18!591;CL:0000003!1.60e-17!722;CL:0000063!1.86e-17!578;CL:0000055!8.20e-17!180;CL:0000057!1.67e-12!75;CL:0002321!4.66e-12!248;CL:0000220!5.08e-12!246;CL:0000066!4.41e-11!254;CL:0000222!4.57e-10!119;CL:0000048!9.03e-07!430;CL:0000359!9.87e-07!32 | |ontology_enrichment_celltype=CL:0000548!1.86e-30!679;CL:0000004!1.86e-30!679;CL:0000255!1.86e-30!679;CL:0000012!3.37e-29!682;CL:0000144!5.57e-21!625;CL:0002371!3.19e-18!591;CL:0000003!1.60e-17!722;CL:0000063!1.86e-17!578;CL:0000055!8.20e-17!180;CL:0000057!1.67e-12!75;CL:0002321!4.66e-12!248;CL:0000220!5.08e-12!246;CL:0000066!4.41e-11!254;CL:0000222!4.57e-10!119;CL:0000048!9.03e-07!430;CL:0000359!9.87e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000359;8.35e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.97e-12,76;CL:0002321,3.78e-10,250;CL:0000222,5.54e-10,121;CL:0000048,2.20e-07,427;CL:0000723,2.65e-07,433;CL:0000066,2.84e-07,253;CL:0000359,3.11e-07,32;CL:0000192,3.81e-07,43;CL:0000514,3.81e-07,43;CL:0000034,9.70e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!1.95e-11!84;UBERON:0000055!3.18e-11!69;UBERON:0001981!1.11e-10!60;UBERON:0007500!1.11e-10!60;UBERON:0004537!1.11e-10!60;UBERON:0006965!1.11e-10!60;UBERON:0002049!2.07e-10!79;UBERON:0007798!2.07e-10!79;UBERON:0003914!3.12e-10!118;UBERON:0001637!9.65e-10!42;UBERON:0003509!9.65e-10!42;UBERON:0004572!9.65e-10!42;UBERON:0000490!1.41e-08!138;UBERON:0004573!9.83e-08!33;UBERON:0004571!9.83e-08!33;UBERON:0002100!1.75e-07!216;UBERON:0004535!2.80e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.93e-08;42!UBERON:0003509;7.93e-08;42!UBERON:0004572;7.93e-08;42!UBERON:0004573;1.28e-07;33!UBERON:0004571;1.28e-07;33!UBERON:0007500;3.19e-07;56!UBERON:0001981;3.19e-07;56!UBERON:0004537;3.19e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.58e-11,83;UBERON:0000055,3.73e-11,68;UBERON:0003914,1.23e-10,117;UBERON:0007500,1.23e-10,59;UBERON:0001981,1.23e-10,59;UBERON:0004537,1.23e-10,59;UBERON:0006965,1.23e-10,59;UBERON:0001637,1.62e-10,42;UBERON:0003509,1.62e-10,42;UBERON:0004572,1.62e-10,42;UBERON:0002049,4.62e-10,78;UBERON:0007798,4.62e-10,78;UBERON:0000490,1.42e-08,148;UBERON:0004573,2.83e-08,33;UBERON:0004571,2.83e-08,33;UBERON:0004535,7.75e-08,109;UBERON:0002100,2.94e-07,199;UBERON:0001009,4.70e-07,112 | |||
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| ||
|short_description=p4@SHMT2 | |short_description=p4@SHMT2 | ||
}} | }} |
Latest revision as of 13:38, 19 September 2015
Short description: | p4@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SHMT2_5end |
Coexpression cluster: | C2221_Mesenchymal_Fibroblast_Keratocytes_Keratinocyte_Osteoblast_mesenchymal_Hepatocyte |
Association with transcript: | 9bp_to_ENST00000557302_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.97e-12 | 76 |
embryonic cell | 3.78e-10 | 250 |
mesodermal cell | 5.54e-10 | 121 |
multi fate stem cell | 2.20e-07 | 427 |
somatic stem cell | 2.65e-07 | 433 |
epithelial cell | 2.84e-07 | 253 |
vascular associated smooth muscle cell | 3.11e-07 | 32 |
smooth muscle cell | 3.81e-07 | 43 |
smooth muscle myoblast | 3.81e-07 | 43 |
stem cell | 9.70e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 2.58e-11 | 83 |
vessel | 3.73e-11 | 68 |
epithelial tube | 1.23e-10 | 117 |
epithelial tube open at both ends | 1.23e-10 | 59 |
blood vessel | 1.23e-10 | 59 |
blood vasculature | 1.23e-10 | 59 |
vascular cord | 1.23e-10 | 59 |
artery | 1.62e-10 | 42 |
arterial blood vessel | 1.62e-10 | 42 |
arterial system | 1.62e-10 | 42 |
vasculature | 4.62e-10 | 78 |
vascular system | 4.62e-10 | 78 |
unilaminar epithelium | 1.42e-08 | 148 |
systemic artery | 2.83e-08 | 33 |
systemic arterial system | 2.83e-08 | 33 |
cardiovascular system | 7.75e-08 | 109 |
trunk | 2.94e-07 | 199 |
circulatory system | 4.70e-07 | 112 |