FFCP PHASE1:Hg19::chr12:57624170..57624186,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt=G3V540 | |UniProt=G3V540 | ||
|association_with_transcript=0bp_to_ENST00000554604_5end | |association_with_transcript=0bp_to_ENST00000554604_5end | ||
|cluster_id=chr12:57624170..57624186,+ | |||
|coexpression_cluster_id=C3305 | |||
|description=CAGE_peak_6_at_SHMT2_5end | |description=CAGE_peak_6_at_SHMT2_5end | ||
|id=chr12:57624170..57624186,+ | |id=chr12:57624170..57624186,+ | ||
|ontology_enrichment_celltype=CL:0000548!4.00e-22!679;CL:0000004!4.00e-22!679;CL:0000255!4.00e-22!679;CL:0000012!1.82e-21!682;CL:0000055!5.29e-21!180;CL:0000144!4.73e-15!625;CL:0000003!2.05e-13!722;CL:0000057!2.44e-11!75;CL:0002371!2.47e-10!591;CL:0002321!5.26e-10!248;CL:0000220!6.85e-10!246;CL:0000183!2.06e-08!59;CL:0000359!1.47e-07!32;CL:0000063!2.17e-07!578;CL:0000680!2.94e-07!57;CL:0000056!2.94e-07!57;CL:0000355!2.94e-07!57;CL:0000187!3.92e-07!54;CL:0000393!5.82e-07!60;CL:0000211!5.82e-07!60;CL:0000066!8.70e-07!254 | |ontology_enrichment_celltype=CL:0000548!4.00e-22!679;CL:0000004!4.00e-22!679;CL:0000255!4.00e-22!679;CL:0000012!1.82e-21!682;CL:0000055!5.29e-21!180;CL:0000144!4.73e-15!625;CL:0000003!2.05e-13!722;CL:0000057!2.44e-11!75;CL:0002371!2.47e-10!591;CL:0002321!5.26e-10!248;CL:0000220!6.85e-10!246;CL:0000183!2.06e-08!59;CL:0000359!1.47e-07!32;CL:0000063!2.17e-07!578;CL:0000680!2.94e-07!57;CL:0000056!2.94e-07!57;CL:0000355!2.94e-07!57;CL:0000187!3.92e-07!54;CL:0000393!5.82e-07!60;CL:0000211!5.82e-07!60;CL:0000066!8.70e-07!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.54e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.97e-09!118;UBERON:0002100!2.07e-08!216;UBERON:0000490!2.08e-08!138;UBERON:0005256!9.40e-08!143;UBERON:0001637!1.03e-07!42;UBERON:0003509!1.03e-07!42;UBERON:0004572!1.03e-07!42;UBERON:0004872!1.59e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.84e-08;19!UBERON:0006925;3.84e-08;19!UBERON:0002331;5.02e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,4.63e-08,19;UBERON:0006925,4.63e-08,19;UBERON:0008836,4.63e-08,19;UBERON:0002331,3.11e-07,10;UBERON:0000358,3.11e-07,10;UBERON:0000307,3.11e-07,10;UBERON:0000091,3.11e-07,10;UBERON:0000087,3.11e-07,10;UBERON:0007010,3.11e-07,10;UBERON:0007806,3.11e-07,10;UBERON:0008780,3.11e-07,10;UBERON:0005728,3.11e-07,10 | |||
|phase1_expression=2.72517568905835,0.642301571672949,1.40954404095971,1.0007329835313,0.893922188854576,1.74467704820074,0,0,0.522371256399677,0.491467873003018,1.39560233594486,0,0.527533956456907,0,0,0.672325146451775,0,0.730310090387373,0,0.246242116153576,0,6.58254915103984,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,1.47901604066715,0.309868802321207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0.641858054152187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.58969213826478,1.80719576192283,1.50401373190767,1.73815822752988,0,1.45990461090791,0,0,0.175669571386252,0,0.728590576585084,1.11235332835329,0.324547393654683,0.696518949197069,0.531831842075461,0,0,0,2.18638648103376,0,0.347140501607594,0,0.838998872419812,0.275118041940067,0,0,0,0.66944122552934,0,0.760272105718513,0.24406205754817,0,0.81014194788176,0.0892997282840798,0,0.225222960966644,0,0,0.183201743930407,0,0,1.74437620857014,1.49091585508596,3.54565432660823,0.662045904066094,3.44203944898576,2.4826786753885,2.24271040056923,8.5399196583764,2.96001058100592,0.311211035399766,7.67850830797222,0,2.72443369760877,0.576175924479999,12.653357319025,0,0.570471821544449,0.448346041655403,0.469737994575059,0.971237666208789,0.280901613404497,0,0.368502951935304,1.03325781175765,3.56400857184616,3.21447008062124,0.910161361938026,5.74894513452991,0,0.125118519871964,0,0,0.612975591598039,1.50238058906597,1.13432183160021,0.358779271377724,1.49490172172997,1.69545520927649,0.600182192168805,1.13357782162283,2.57640540045629,1.8611685633159,1.0126579934476,2.24105111870757,0.504867548488229,1.28869858099219,0.969876340912871,0.355009592516614,0.503760491138201,0.67824236924195,0,0.272746120590835,0,0.121973706129595,0.265059536642971,0.69716365721711,0.207322110030741,1.00928340350251,0,0,1.28648187638577,0,0,0,0,0.337169380156203,0,0.220587945464788,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0,1.40241773803446,0,1.47008711385542,3.80265104465493,2.94848165003288,1.77236972004421,0,0.245976877086227,0.514703430895577,0,1.1240175325762,0.201057944823262,0.185176890317059,34.5356803628944,5.19967392639789,0,0.463721619900307,4.10930429825376,0,0,0,0,0,0,0,0,0,0,0,0.53735113621709,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0.285826432630578,1.79409734952577,0.87192013766656,0.2933531432838,4.52451005152222,3.57656445851882,0,2.12750493267896,0,0.514414748524284,0,0,4.86125178437702,6.51145926469732,2.46972101034231,0,3.909311436168,0,0.301439377059586,0,0,0,0,0,5.75099653179798,3.44585807502342,0,0.144781306667579,0.410952645100767,0.179060963239896,0.560425719967636,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0,8.68048075839154,1.66376689224646,2.14114786556594,1.73472656537328,0.585707074963566,0.902838299183157,4.5481500811197,3.10419213877515,2.65690239414175,1.29058417979192,0.173767228936166,4.11182430671755,1.37257369524342,0,0,0,0.909382714338778,6.65741758041988,2.72151263996712,2.48107807818777,1.68808170616869,1.12264037773229,1.28139149255701,1.53512174720011,2.2519548960105,1.48418066444991,0,1.42049380250502,0.164254312027618,0,0,0.846016147141356,0,0,3.21480454860899,2.54927635209404,0.917870904715969,0.451199612907412,0.0770153371044148,0.784349769176855,0,0,0,0.340187410553031,0.215915916102139,0,0.812839312631559,1.00337954770971,0.254876273045038,0.831076008928724,0.447749509444357,0,0,0,0,1.62689197332152,0.103041011647722,0,0.082509499920588,0,0,1.6068392984416,4.35018232314549,0.308097234229289,0.460511024178389,0.137836572484531,2.14840489736547,0,0.0852266274161009,6.49933860221183,0.165284915360978,0.192190067365106,0,0.2023155617111,2.78907329578371,1.5740617341532,0,1.54016790088044,1.59691809095107,0.869932992075073,1.11194531462352,2.28999818787186,0.372158369359667,0,0.571890581771475,1.27948895655667,1.71175595213568,1.27281299170375,0.78494864019923,0,0,0.471249609382746,1.01091240786658,1.58510321173008,0.421258456238981,0.975267478179181,0.487426979262569,3.16950440270266,1.36499911407986,4.94919011837995,1.13008116620243,1.10273068709225,1.99031692572366,1.31535265576129,0,0,1.82619339266434,0.6196469961995,1.69017361519345,0.143411352204052,6.484436706866,2.85336841185,0,0.211107635297664,0.329294892959902,1.89736586882858,24.8453651373938,0.577332676353072,0,3.26672954583968,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,8.66231869737023,0,1.11481905075431,0,2.98795742063339,0,0,0,13.3354357116046,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0.835218521685727,1.23087398947712,0.540911356951966,0,0,0,0,0,0,0,0,0,0,0,0,2.11486539543521,0,0,0,0,0,0.306806047506464,0.123084805461069,0.622079175323615,0.0898683511473268,0,0,0,0,0,0,0,0,1.82299432759663,0,0,1.0241410345695,0,0,0,0,12.8482496250636,0,0,0,0,0,0,0.21787692703798,0.278847488557207,0,3.30431961956303,0.23056390438806,0.179515288819544,2.28159481036217,0,0.0915975934018623,0.533034776018635,0,0,0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| ||
|short_description=p6@SHMT2 | |short_description=p6@SHMT2 | ||
}} | }} |
Latest revision as of 13:39, 19 September 2015
Short description: | p6@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SHMT2_5end |
Coexpression cluster: | C3305_mesothelioma_Keratocytes_Fibroblast_hepatoma_Trabecular_acute_gastrointestinal |
Association with transcript: | 0bp_to_ENST00000554604_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | G3V540 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.54e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
liver | 4.63e-08 | 19 |
digestive gland | 4.63e-08 | 19 |
liver bud | 4.63e-08 | 19 |
umbilical cord | 3.11e-07 | 10 |
blastocyst | 3.11e-07 | 10 |
blastula | 3.11e-07 | 10 |
bilaminar disc | 3.11e-07 | 10 |
inner cell mass | 3.11e-07 | 10 |
cleaving embryo | 3.11e-07 | 10 |
connecting stalk | 3.11e-07 | 10 |
inner cell mass derived epiblast | 3.11e-07 | 10 |
extraembryonic mesoderm | 3.11e-07 | 10 |