FFCP PHASE1:Hg19::chr11:66139160..66139170,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:66139160..66139170,- to FFCP PHASE1:Hg19::chr11:66139160..66139170,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3177 | |EntrezGene=3177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11004 | |HGNC=11004 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-42bp_to_ENST00000541567_5end | |||
|cluster_id=chr11:66139160..66139170,- | |||
|coexpression_cluster_id=C3192 | |||
|description=CAGE_peak_9_at_SLC29A2_5end | |||
|id=chr11:66139160..66139170,- | |||
|ontology_enrichment_celltype=CL:0000066!5.39e-18!254;CL:0000039!7.61e-10!7;CL:0000586!7.61e-10!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.61e-50;7!CL:0000586;2.61e-50;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.22e-50,7;CL:0000586,1.22e-50,7 | |||
|ontology_enrichment_development_v019=UBERON:0008425;8.61e-12;1!UBERON:0009117;1.65e-09;10!UBERON:0005564;1.65e-09;10 | |||
|ontology_enrichment_disease=DOID:305!6.08e-30!106;DOID:0050687!1.74e-27!143;DOID:162!3.12e-22!235;DOID:14566!1.08e-21!239;DOID:3095!2.47e-11!22;DOID:2994!2.47e-11!22;DOID:299!3.94e-08!25;DOID:1749!7.54e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.42e-23;4!DOID:1612;1.42e-23;4!DOID:3095;2.32e-21;22!DOID:2994;2.32e-21;22!DOID:1799;1.06e-11;1!DOID:10165;1.06e-11;1!DOID:1798;1.06e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.01e-23,4;DOID:1612,1.01e-23,4;DOID:3095,1.84e-21,22;DOID:2994,1.84e-21,22;DOID:0050687,1.77e-15,143;DOID:305,7.37e-14,106;DOID:1799,9.57e-12,1;DOID:10165,9.57e-12,1;DOID:1798,9.57e-12,1;DOID:162,1.05e-09,235;DOID:14566,1.89e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.30e-10!169;UBERON:0000925!9.30e-10!169;UBERON:0006595!9.30e-10!169;UBERON:0001007!1.06e-08!155;UBERON:0001555!1.06e-08!155;UBERON:0007026!1.06e-08!155;UBERON:0000065!2.70e-08!53;UBERON:0000077!3.08e-08!130;UBERON:0000464!7.36e-08!104;UBERON:0001004!1.00e-07!72;UBERON:0004921!1.40e-07!129;UBERON:0004185!1.40e-07!129;UBERON:0008947!2.55e-07!38;UBERON:0003258!2.55e-07!38;UBERON:0000072!2.81e-07!46;UBERON:0001041!7.76e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;9.42e-12;8!UBERON:0000310;8.86e-10;10!UBERON:0001443;6.18e-09;11!UBERON:0003135;1.08e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.39e-11,8;UBERON:0000310,7.76e-10,10;UBERON:0001443,5.48e-09,11;UBERON:0003135,1.43e-08,11;UBERON:0003886,2.63e-08,54;UBERON:0002553,2.85e-07,61 | |||
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| ||
|short_description=p9@SLC29A2 | |||
}} | }} |
Latest revision as of 14:20, 19 September 2015
Short description: | p9@SLC29A2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SLC29A2_5end |
Coexpression cluster: | C3192_choriocarcinoma_rectal_breast_pancreatic_adenocarcinoma_Alveolar_Renal |
Association with transcript: | -42bp_to_ENST00000541567_5end |
EntrezGene: | SLC29A2 |
HGNC: | 11004 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.22e-50 | 7 |
germ cell | 1.22e-50 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 1.39e-11 | 8 |
breast | 7.76e-10 | 10 |
chest | 5.48e-09 | 11 |
male reproductive organ | 1.43e-08 | 11 |
body cavity precursor | 2.63e-08 | 54 |
anatomical cavity | 2.85e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.01e-23 | 4 |
breast cancer | 1.01e-23 | 4 |
germ cell and embryonal cancer | 1.84e-21 | 22 |
germ cell cancer | 1.84e-21 | 22 |
cell type cancer | 1.77e-15 | 143 |
carcinoma | 7.37e-14 | 106 |
islet cell tumor | 9.57e-12 | 1 |
endocrine pancreas cancer | 9.57e-12 | 1 |
pancreatic endocrine carcinoma | 9.57e-12 | 1 |
cancer | 1.05e-09 | 235 |
disease of cellular proliferation | 1.89e-09 | 239 |