FFCP PHASE1:Hg19::chrX:135614293..135614318,+: Difference between revisions
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(Created page with "{{FFCP
|id=chrX:135614293..135614318,+
|short_description=p2@VGLL1
|description=CAGE_peak_2_at_VGLL1_5end
|association_with_transcript=0bp_to_ENST00000370634,ENST000004306...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51442 | |EntrezGene=51442 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20985 | |HGNC=20985 | ||
|TSSclassifier=strong | |||
|UniProt=Q99990,E9PHC2 | |UniProt=Q99990,E9PHC2 | ||
|association_with_transcript=0bp_to_ENST00000370634,ENST00000430688,NM_016267,uc004ezy.2_5end | |||
|cluster_id=chrX:135614293..135614318,+ | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_2_at_VGLL1_5end | |||
|id=chrX:135614293..135614318,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.48e-21!254;CL:0002076!4.18e-15!43;CL:0000223!6.37e-12!59;CL:0000039!5.62e-10!7;CL:0000586!5.62e-10!7;CL:0000244!3.74e-08!4;CL:0000731!3.74e-08!4;CL:0002159!6.26e-08!13;CL:0002541!1.34e-07!3;CL:0000349!3.54e-07!3;CL:0002577!3.54e-07!3;CL:0002251!6.27e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.66e-22;19!CL:0002541;8.79e-13;3!CL:0002577;6.12e-12;3!CL:1000415;1.83e-08;2!CL:0002536;2.47e-08;2!CL:0000575;3.38e-08;2!CL:0002537;7.89e-08;5!CL:0002681;2.62e-07;12!CL:0002584;2.62e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.51e-22,19;CL:0002541,9.14e-13,3;CL:0002577,5.47e-12,3;CL:0000066,7.07e-12,253;CL:1000415,1.94e-08,2;CL:0002536,2.33e-08,2;CL:0000575,3.64e-08,2;CL:0002537,7.72e-08,5;CL:0002681,2.58e-07,12;CL:0002584,2.58e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!5.05e-09!14;DOID:305!5.38e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.37e-20!14;UBERON:0000158!1.37e-20!14;UBERON:0003124!4.25e-15!7;UBERON:0000478!1.51e-12!24;UBERON:0004119!1.79e-12!169;UBERON:0000925!1.79e-12!169;UBERON:0006595!1.79e-12!169;UBERON:0001008!1.21e-11!45;UBERON:0006554!1.08e-10!44;UBERON:0005156!1.11e-10!59;UBERON:0000990!1.11e-10!59;UBERON:0000365!1.56e-09!5;UBERON:0000161!2.65e-09!35;UBERON:0001987!3.55e-09!4;UBERON:0004340!3.55e-09!4;UBERON:0004923!5.37e-09!57;UBERON:0003975!6.95e-09!22;UBERON:0000344!1.38e-08!12;UBERON:0001046!3.32e-08!19;UBERON:0003133!3.88e-08!48;UBERON:0003100!5.28e-08!41;UBERON:0005910!7.25e-08!6;UBERON:0005911!7.84e-08!82;UBERON:0000305!8.10e-08!7;UBERON:0000995!8.32e-08!21;UBERON:0000476!1.34e-07!3;UBERON:0000920!1.34e-07!3;UBERON:0004175!1.66e-07!25;UBERON:0005795!2.39e-07!22;UBERON:0000162!2.62e-07!14;UBERON:0001353!2.62e-07!14;UBERON:0000163!2.62e-07!14;UBERON:0006866!2.62e-07!14;UBERON:0000164!2.62e-07!14;UBERON:0000931!2.62e-07!14;UBERON:0000077!3.92e-07!130;UBERON:0000464!4.27e-07!104;UBERON:0003134!5.05e-07!37;UBERON:0000474!5.05e-07!37;UBERON:0003064!7.96e-07!37;UBERON:0004871!9.22e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.88e-24;24!UBERON:0005631;4.63e-24;10!UBERON:0000158;4.63e-24;10!UBERON:0001987;1.19e-15;4!UBERON:0000305;9.10e-14;7!UBERON:0003124;8.79e-13;3!UBERON:0000920;8.79e-13;3!UBERON:0002294;1.15e-08;7!UBERON:0001173;1.15e-08;7!UBERON:0000077;2.45e-07;27!UBERON:0001225;2.62e-07;12!UBERON:0008987;2.62e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.06e-37,14;UBERON:0000158,1.06e-37,14;UBERON:0003124,1.08e-26,7;UBERON:0000478,1.83e-24,24;UBERON:0001987,1.10e-15,4;UBERON:0004340,1.10e-15,4;UBERON:0000305,8.52e-14,7;UBERON:0006554,1.09e-13,47;UBERON:0001008,2.48e-13,48;UBERON:0000920,9.14e-13,3;UBERON:0004871,4.98e-12,8;UBERON:0004923,1.57e-09,66;UBERON:0000995,4.06e-08,21;UBERON:0005795,1.06e-07,22;UBERON:0003975,1.06e-07,22;UBERON:0001225,2.58e-07,12;UBERON:0008987,2.58e-07,12;UBERON:0000077,9.45e-07,29;UBERON:0002294,9.58e-07,9;UBERON:0001173,9.58e-07,9;UBERON:0004912,9.58e-07,9 | |||
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| ||
|short_description=p2@VGLL1 | |||
}} | }} |
Latest revision as of 14:47, 19 September 2015
Short description: | p2@VGLL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VGLL1_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 0bp_to_ENST00000370634, ENST00000430688, NM_016267, uc004ezy.2_5end |
EntrezGene: | VGLL1 |
HGNC: | 20985 |
UniProt: | Q99990E9PHC2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.51e-22 | 19 |
chorionic membrane mesenchymal stem cell | 9.14e-13 | 3 |
placental epithelial cell | 5.47e-12 | 3 |
epithelial cell | 7.07e-12 | 253 |
epithelial cell of gall bladder | 1.94e-08 | 2 |
amniotic epithelial cell | 2.33e-08 | 2 |
corneal epithelial cell | 3.64e-08 | 2 |
amnion mesenchymal stem cell | 7.72e-08 | 5 |
kidney cortical cell | 2.58e-07 | 12 |
renal cortical epithelial cell | 2.58e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.06e-37 | 14 |
membranous layer | 1.06e-37 | 14 |
chorion | 1.08e-26 | 7 |
extraembryonic structure | 1.83e-24 | 24 |
placenta | 1.10e-15 | 4 |
allantois | 1.10e-15 | 4 |
amnion | 8.52e-14 | 7 |
urinary system structure | 1.09e-13 | 47 |
renal system | 2.48e-13 | 48 |
egg chorion | 9.14e-13 | 3 |
somatic layer of lateral plate mesoderm | 4.98e-12 | 8 |
organ component layer | 1.57e-09 | 66 |
uterus | 4.06e-08 | 21 |
embryonic uterus | 1.06e-07 | 22 |
internal female genitalia | 1.06e-07 | 22 |
cortex of kidney | 2.58e-07 | 12 |
renal parenchyma | 2.58e-07 | 12 |
mixed endoderm/mesoderm-derived structure | 9.45e-07 | 29 |
biliary system | 9.58e-07 | 9 |
biliary tree | 9.58e-07 | 9 |
biliary bud | 9.58e-07 | 9 |