FFCP PHASE1:Hg19::chr6:111912658..111912712,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:111912658..111912712,- to FFCP PHASE1:Hg19::chr6:111912658..111912712,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10758 | |EntrezGene=10758 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1343 | |HGNC=1343 | ||
|TSSclassifier=strong | |||
|UniProt=O43734 | |UniProt=O43734 | ||
|association_with_transcript=77bp_to_AK026602_5end | |||
|cluster_id=chr6:111912658..111912712,- | |||
|description=CAGE_peak_4_at_TRAF3IP2_5end | |||
|id=chr6:111912658..111912712,- | |||
|ontology_enrichment_celltype=CL:0000057!1.55e-13!75;CL:0000055!3.52e-13!180;CL:0000548!6.94e-12!679;CL:0000004!6.94e-12!679;CL:0000255!6.94e-12!679;CL:0000012!2.61e-11!682;CL:0002076!6.63e-09!43;CL:0002620!1.04e-08!23;CL:0000066!1.63e-08!254;CL:0000220!2.47e-08!246;CL:0002321!5.89e-08!248;CL:0002251!3.22e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.75e-09;13!CL:0002076;3.43e-08;42!CL:0002251;7.08e-08;20!CL:0002620;3.61e-07;23!CL:0000197;6.32e-07;6!CL:0000098;6.32e-07;6!CL:0002167;6.32e-07;6!CL:0002556;7.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.35e-11,76;CL:0002076,5.13e-11,42;CL:0000136,5.70e-11,15;CL:0002251,2.94e-08,20;CL:0000223,4.43e-08,58;CL:0002620,1.87e-07,23;CL:0000197,4.58e-07,6;CL:0000098,4.58e-07,6;CL:0002167,4.58e-07,6;CL:0002556,7.41e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!1.91e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.08e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.38e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!8.52e-19!95;UBERON:0000165!3.77e-09!28;UBERON:0000930!3.77e-09!28;UBERON:0004119!1.03e-08!169;UBERON:0000925!1.03e-08!169;UBERON:0006595!1.03e-08!169;UBERON:0001444!1.54e-08!48;UBERON:0000475!2.25e-08!365;UBERON:0000161!1.08e-07!35;UBERON:0002097!1.31e-07!40;UBERON:0002199!1.66e-07!45;UBERON:0002416!1.66e-07!45;UBERON:0001007!8.75e-07!155;UBERON:0001555!8.75e-07!155;UBERON:0007026!8.75e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;2.02e-13;28!UBERON:0003729;2.36e-11;13!UBERON:0000161;1.44e-09;19!UBERON:0000166;1.44e-09;19!UBERON:0001013;1.13e-08;14!UBERON:0000486;5.56e-08;12!UBERON:0003102;1.03e-07;50!UBERON:0007811;2.27e-07;52!UBERON:0000344;2.61e-07;20!UBERON:0001444;4.14e-07;48!UBERON:0002199;5.87e-07;46!UBERON:0002416;5.87e-07;46!UBERON:0001828;6.61e-07;8!UBERON:0001758;7.72e-07;6!UBERON:0003672;7.72e-07;6!UBERON:0002097;9.44e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.38e-22,99;UBERON:0000165,4.67e-13,29;UBERON:0000930,4.67e-13,29;UBERON:0003729,9.41e-12,13;UBERON:0001444,9.67e-12,49;UBERON:0000033,5.28e-11,56;UBERON:0000153,4.90e-09,62;UBERON:0007811,4.90e-09,62;UBERON:0002199,5.92e-09,46;UBERON:0002416,5.92e-09,46;UBERON:0002097,1.11e-08,41;UBERON:0001013,2.18e-08,14;UBERON:0000161,3.95e-08,36;UBERON:0000166,7.27e-08,22;UBERON:0000344,1.31e-07,20;UBERON:0001828,5.12e-07,8;UBERON:0001758,7.41e-07,6;UBERON:0003672,7.41e-07,6 | |||
|phase1_expression=1.63510541343501,8.99222200342129,4.36958652697511,0,4.91657203870017,2.61701557230111,0,3.15859936713415,5.22371256399677,0,0.697801167972428,0,0,2.59909341216098,2.31978163009541,0.672325146451775,0.602694528023977,0,0,0.369363174230364,0.612002073732759,0.313454721478088,0,0.136874425072884,0,0.229240217243854,0,0,0,0.383829398097213,0,2.75826367343678,4.2168828628955,6.28581817283539,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0,0.236482229888585,0.689491361473237,0,1.35426486594342,0.376484679085209,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0,0.852449501065388,0.870627715885752,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.12786256184353,1.80719576192283,1.00267582127178,3.33146993609895,0.795285947051099,1.94653948121054,0,0.221729397462564,0,0,1.45718115317017,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,6.10531672999548,1.49091585508596,0.12663051166458,1.05927344650575,0,0.354668382198357,0,0,0.98667019366864,0.933633106199299,0.134710672069688,0,0.302714855289863,0.576175924479999,5.38939293217732,1.5608003841516,1.71141546463335,1.34503812496621,1.87895197830024,1.29498355494505,0.842704840213491,3.26646674007829,0.245668634623536,9.29932030581889,7.12801714369232,4.69807165629258,0,1.43723628363248,2.02003336744879,1.50142223846357,2.21651292387346,3.5118209670467,4.59731693698529,3.75595147266492,0,1.25572744982203,3.84403299873421,1.48352330811693,1.50045548042201,3.81294358182224,0.772921620136887,2.23340227597908,0.337552664482532,0.584622030967192,1.51460264546469,4.41839513483037,2.58633690910099,0.355009592516614,0.705264687593482,1.3564847384839,1.93260853163297,1.36373060295417,3.44165514466805,0,0,0.116193942869518,0.10366105501537,0,0,0,1.28648187638577,0,2.78620756819187,2.88751792667834,0.473227200159376,0.168584690078102,0.482022059766964,0.882351781859152,0.653638332277218,0.237270619111097,0.269662616320329,0.392442930250692,0.769494313892781,0.738155454624648,0,0,0,0,0,0,0,0.122988438543114,0.514703430895577,2.74375713521564,3.37205259772859,1.3068766413512,1.85176890317059,3.25808305310325,1.03993478527958,1.44331342025273,0,0.352226082707465,0,0,0.190254152234598,2.37061319387782,0.858486162094873,0,0,0,2.81201501960331,0.335964256397719,0.708875486211932,1.34337784054272,0.290633938513962,2.68367875415648,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.517086863031111,10.7296933755565,1.690605505112,0.531876233169741,1.04007436911366,1.02882949704857,0,0.266422179016099,0.57191197463259,1.62786481617433,5.76268235746538,1.30294473717494,0.355391948742546,0,2.71295439353627,0,1.09970290300263,0,0,0,1.91699884393266,2.29723871668228,0,1.01346914667305,1.43833425785268,1.07436577943937,0,0,0,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,2.20844685094452,1.50051156317903,0.813795071099207,1.66376689224646,2.3195768543631,3.46945313074656,3.39710103478868,1.50473049863859,0,3.10419213877515,0,0.553107505625109,2.08520674723399,0,0,0,0,0.106727557803444,0,0,0,2.23297027036899,0.306923946576125,0.561320188866147,1.28139149255701,1.53512174720011,0.482561763430822,2.96836132889982,0.154209693802656,0,1.23190734020714,0,0.697262270759755,0,3.40860999515584,9.85266581614091,1.83703117063371,1.27463817604702,1.70461739447251,0.451199612907412,0,0,0,0.105551628892876,0,0,0,0,0.812839312631559,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0.650756789328606,0.103041011647722,0.183138929636687,0,3.44559322797703,0.650060246036521,0,0.870036464629098,2.00263202249038,2.30255512089194,0.413509717453592,3.54486808065303,3.62541734785571,0.852266274161009,0.178064071293475,3.14041339185858,3.2672311452068,0.638063562472921,2.32662895967765,0.929691098594572,0.31481234683064,0.6970372701606,0.616067160352178,0,0,0.74129687641568,1.28812398067792,0.372158369359667,0,0,1.02359116524534,1.71175595213568,0.318203247925937,0,0.899362287916574,0,1.06031162111118,0.606547444719948,0,0.421258456238981,1.46290121726877,0,0,0.682499557039929,0.989838023675989,2.26016233240486,1.10273068709225,1.32687795048244,0,1.73632660280006,0.655894752046633,0,0,0.281695602532241,0,0.491245205065606,0,0.709522128141196,3.58882980006029,2.63435914367922,4.9331512589543,4.54915136318478,3.56021817084395,2.01090682660736,3.26672954583968,0,4.3050537267123,3.36942951335251,3.10401107475673,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,2.3441308683503,0,0,0,0,0,0,0,0,1.11308705022906,0.494411622680279,0.211125408127993,0,0,0.2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|phase1_expression=1.63510541343501,8.99222200342129,4.36958652697511,0,4.91657203870017,2.61701557230111,0,3.15859936713415,5.22371256399677,0,0.697801167972428,0,0,2.59909341216098,2.31978163009541,0.672325146451775,0.602694528023977,0,0,0.369363174230364,0.612002073732759,0.313454721478088,0,0.136874425072884,0,0.229240217243854,0,0,0,0.383829398097213,0,2.75826367343678,4.2168828628955,6.28581817283539,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.309706370895104,0.28769239232215,0,0.236482229888585,0.689491361473237,0,1.35426486594342,0.376484679085209,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0,0.852449501065388,0.870627715885752,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0.12786256184353,1.80719576192283,1.00267582127178,3.33146993609895,0.795285947051099,1.94653948121054,0,0.221729397462564,0,0,1.45718115317017,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,6.10531672999548,1.49091585508596,0.12663051166458,1.05927344650575,0,0.354668382198357,0,0,0.98667019366864,0.933633106199299,0.134710672069688,0,0.302714855289863,0.576175924479999,5.38939293217732,1.5608003841516,1.71141546463335,1.34503812496621,1.87895197830024,1.29498355494505,0.842704840213491,3.26646674007829,0.245668634623536,9.29932030581889,7.12801714369232,4.69807165629258,0,1.43723628363248,2.02003336744879,1.50142223846357,2.21651292387346,3.5118209670467,4.59731693698529,3.75595147266492,0,1.25572744982203,3.84403299873421,1.48352330811693,1.50045548042201,3.81294358182224,0.772921620136887,2.23340227597908,0.337552664482532,0.584622030967192,1.51460264546469,4.41839513483037,2.58633690910099,0.355009592516614,0.705264687593482,1.3564847384839,1.93260853163297,1.36373060295417,3.44165514466805,0,0,0.116193942869518,0.10366105501537,0,0,0,1.28648187638577,0,2.78620756819187,2.88751792667834,0.473227200159376,0.168584690078102,0.482022059766964,0.882351781859152,0.653638332277218,0.237270619111097,0.269662616320329,0.392442930250692,0.769494313892781,0.738155454624648,0,0,0,0,0,0,0,0.122988438543114,0.514703430895577,2.74375713521564,3.37205259772859,1.3068766413512,1.85176890317059,3.25808305310325,1.03993478527958,1.44331342025273,0,0.352226082707465,0,0,0.190254152234598,2.37061319387782,0.858486162094873,0,0,0,2.81201501960331,0.335964256397719,0.708875486211932,1.34337784054272,0.290633938513962,2.68367875415648,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.517086863031111,10.7296933755565,1.690605505112,0.531876233169741,1.04007436911366,1.02882949704857,0,0.266422179016099,0.57191197463259,1.62786481617433,5.76268235746538,1.30294473717494,0.355391948742546,0,2.71295439353627,0,1.09970290300263,0,0,0,1.91699884393266,2.29723871668228,0,1.01346914667305,1.43833425785268,1.07436577943937,0,0,0,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,2.20844685094452,1.50051156317903,0.813795071099207,1.66376689224646,2.3195768543631,3.46945313074656,3.39710103478868,1.50473049863859,0,3.10419213877515,0,0.553107505625109,2.08520674723399,0,0,0,0,0.106727557803444,0,0,0,2.23297027036899,0.306923946576125,0.561320188866147,1.28139149255701,1.53512174720011,0.482561763430822,2.96836132889982,0.154209693802656,0,1.23190734020714,0,0.697262270759755,0,3.40860999515584,9.85266581614091,1.83703117063371,1.27463817604702,1.70461739447251,0.451199612907412,0,0,0,0.105551628892876,0,0,0,0,0.812839312631559,0.501689773854853,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0.650756789328606,0.103041011647722,0.183138929636687,0,3.44559322797703,0.650060246036521,0,0.870036464629098,2.00263202249038,2.30255512089194,0.413509717453592,3.54486808065303,3.62541734785571,0.852266274161009,0.178064071293475,3.14041339185858,3.2672311452068,0.638063562472921,2.32662895967765,0.929691098594572,0.31481234683064,0.6970372701606,0.616067160352178,0,0,0.74129687641568,1.28812398067792,0.372158369359667,0,0,1.02359116524534,1.71175595213568,0.318203247925937,0,0.899362287916574,0,1.06031162111118,0.606547444719948,0,0.421258456238981,1.46290121726877,0,0,0.682499557039929,0.989838023675989,2.26016233240486,1.10273068709225,1.32687795048244,0,1.73632660280006,0.655894752046633,0,0,0.281695602532241,0,0.491245205065606,0,0.709522128141196,3.58882980006029,2.63435914367922,4.9331512589543,4.54915136318478,3.56021817084395,2.01090682660736,3.26672954583968,0,4.3050537267123,3.36942951335251,3.10401107475673,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,2.3441308683503,0,0,0,0,0,0,0,0,1.11308705022906,0.494411622680279,0.211125408127993,0,0,0.2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| ||
|short_description=p4@TRAF3IP2 | |||
}} | }} |
Latest revision as of 21:03, 19 September 2015
Short description: | p4@TRAF3IP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRAF3IP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 77bp_to_AK026602_5end |
EntrezGene: | TRAF3IP2 |
HGNC: | 1343 |
UniProt: | O43734 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.35e-11 | 76 |
endo-epithelial cell | 5.13e-11 | 42 |
fat cell | 5.70e-11 | 15 |
epithelial cell of alimentary canal | 2.94e-08 | 20 |
endodermal cell | 4.43e-08 | 58 |
skin fibroblast | 1.87e-07 | 23 |
receptor cell | 4.58e-07 | 6 |
sensory epithelial cell | 4.58e-07 | 6 |
olfactory epithelial cell | 4.58e-07 | 6 |
fibroblast of periodontium | 7.41e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.38e-22 | 99 |
mouth | 4.67e-13 | 29 |
stomodeum | 4.67e-13 | 29 |
mouth mucosa | 9.41e-12 | 13 |
subdivision of head | 9.67e-12 | 49 |
head | 5.28e-11 | 56 |
anterior region of body | 4.90e-09 | 62 |
craniocervical region | 4.90e-09 | 62 |
integument | 5.92e-09 | 46 |
integumental system | 5.92e-09 | 46 |
skin of body | 1.11e-08 | 41 |
adipose tissue | 2.18e-08 | 14 |
orifice | 3.95e-08 | 36 |
oral opening | 7.27e-08 | 22 |
mucosa | 1.31e-07 | 20 |
gingiva | 5.12e-07 | 8 |
periodontium | 7.41e-07 | 6 |
dentition | 7.41e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.38e-08 | 14 |