FFCP PHASE1:Hg19::chr3:119500891..119500904,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8856 | |EntrezGene=8856 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7968 | |HGNC=7968 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_ENST00000474090_5end | |association_with_transcript=9bp_to_ENST00000474090_5end | ||
|cluster_id=chr3:119500891..119500904,+ | |||
|coexpression_cluster_id=C211 | |coexpression_cluster_id=C211 | ||
|description=CAGE_peak_2_at_NR1I2_5end | |description=CAGE_peak_2_at_NR1I2_5end | ||
|id=chr3:119500891..119500904,+ | |id=chr3:119500891..119500904,+ | ||
|ontology_enrichment_celltype=CL:0000181!4.15e-19!12;CL:0000417!4.15e-19!12;CL:0000668!4.15e-19!12;CL:0000414!4.15e-19!12;CL:0000412!4.15e-19!12;CL:0000182!4.15e-19!12;CL:0000223!8.26e-07!59 | |ontology_enrichment_celltype=CL:0000181!4.15e-19!12;CL:0000417!4.15e-19!12;CL:0000668!4.15e-19!12;CL:0000414!4.15e-19!12;CL:0000412!4.15e-19!12;CL:0000182!4.15e-19!12;CL:0000223!8.26e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.59e-27;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.60e-27,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.28e-29;11!UBERON:0009497;4.37e-25;13!UBERON:0006242;2.25e-14;1!UBERON:0003104;3.64e-10;31!UBERON:0001041;2.97e-07;30 | |||
|ontology_enrichment_disease=DOID:178!3.96e-10!1;DOID:326!3.96e-10!1;DOID:3978!3.96e-10!1;DOID:3394!3.96e-10!1;DOID:5844!3.96e-10!1 | |ontology_enrichment_disease=DOID:178!3.96e-10!1;DOID:326!3.96e-10!1;DOID:3978!3.96e-10!1;DOID:3394!3.96e-10!1;DOID:5844!3.96e-10!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002423;2.47e-25;25!UBERON:0002107;8.58e-25;19!UBERON:0006925;8.58e-25;19!UBERON:0002108;1.41e-24;4!UBERON:0000160;1.85e-18;17!UBERON:0002365;1.02e-14;31!UBERON:0002330;1.02e-14;31!UBERON:0005409;1.87e-14;22!UBERON:0002368;3.86e-12;33!UBERON:0000949;5.31e-10;43!UBERON:0001007;3.51e-09;81!UBERON:0004921;7.43e-09;33!UBERON:0005172;4.83e-07;52!UBERON:0005173;4.83e-07;52!UBERON:0001155;7.87e-07;9!UBERON:0002417;8.17e-07;58!UBERON:0000916;8.17e-07;58 | |||
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|short_description=p2@NR1I2 | |short_description=p2@NR1I2 | ||
}} | }} |
Latest revision as of 21:15, 19 September 2015
Short description: | p2@NR1I2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NR1I2_5end |
Coexpression cluster: | C211_small_Hepatocyte_liver_colon_temporal_duodenum_kidney |
Association with transcript: | 9bp_to_ENST00000474090_5end |
EntrezGene: | NR1I2 |
HGNC: | 7968 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.60e-27 | 12 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 2.25e-25 | 25 |
anatomical boundary | 2.25e-25 | 25 |
hepatobiliary system | 2.25e-25 | 25 |
foregut-midgut junction | 2.25e-25 | 25 |
septum transversum | 2.25e-25 | 25 |
liver | 8.58e-25 | 19 |
digestive gland | 8.58e-25 | 19 |
liver bud | 8.58e-25 | 19 |
small intestine | 1.79e-24 | 4 |
hepatic diverticulum | 2.18e-21 | 22 |
liver primordium | 2.18e-21 | 22 |
digestive tract diverticulum | 1.89e-20 | 23 |
epithelial sac | 8.48e-19 | 25 |
intestine | 1.99e-18 | 17 |
sac | 4.57e-18 | 26 |
exocrine gland | 4.09e-15 | 31 |
exocrine system | 4.09e-15 | 31 |
endocrine gland | 2.34e-13 | 35 |
gastrointestinal system | 9.16e-13 | 25 |
subdivision of digestive tract | 3.17e-12 | 118 |
digestive system | 1.08e-11 | 145 |
digestive tract | 1.08e-11 | 145 |
primitive gut | 1.08e-11 | 145 |
gut epithelium | 1.73e-11 | 54 |
abdomen element | 1.73e-11 | 54 |
abdominal segment element | 1.73e-11 | 54 |
endoderm-derived structure | 1.81e-10 | 160 |
endoderm | 1.81e-10 | 160 |
presumptive endoderm | 1.81e-10 | 160 |
endocrine system | 2.52e-10 | 45 |
abdominal segment of trunk | 2.77e-10 | 60 |
abdomen | 2.77e-10 | 60 |
gland | 8.54e-08 | 59 |
endo-epithelium | 2.28e-07 | 82 |
organ system subdivision | 5.62e-07 | 223 |
colon | 7.64e-07 | 9 |