FFCP PHASE1:Hg19::chr19:54963128..54963155,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114823 | |EntrezGene=114823 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15500 | |HGNC=15500 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000462541_5end | |association_with_transcript=-13bp_to_ENST00000462541_5end | ||
|cluster_id=chr19:54963128..54963155,+ | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_16_at_LENG8_5end | |description=CAGE_peak_16_at_LENG8_5end | ||
|id=chr19:54963128..54963155,+ | |id=chr19:54963128..54963155,+ | ||
|ontology_enrichment_celltype=CL:0002535!4.69e-08!2;CL:0000054!6.58e-08!2;CL:0000137!6.58e-08!2;CL:0000092!6.58e-08!2 | |ontology_enrichment_celltype=CL:0002535!4.69e-08!2;CL:0000054!6.58e-08!2;CL:0000137!6.58e-08!2;CL:0000092!6.58e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000047;8.10e-26;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.69e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | |||
|ontology_enrichment_disease=DOID:3151!1.07e-14!1;DOID:3149!1.07e-14!1;DOID:0060085!1.61e-14!1;DOID:3165!1.61e-14!1;DOID:0060121!1.61e-14!1;DOID:2438!1.61e-14!1;DOID:4418!1.61e-14!1;DOID:4362!1.15e-11!5;DOID:3451!5.37e-08!2;DOID:4159!5.37e-08!2;DOID:0060122!5.37e-08!2;DOID:200!6.58e-08!2;DOID:4305!6.58e-08!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!8.13e-28!2;UBERON:0002757!8.13e-28!2;UBERON:0010134!8.13e-28!2;UBERON:0002784!8.13e-28!2;UBERON:0005408!8.13e-28!2;UBERON:0001899!8.13e-28!2;UBERON:0003296!1.97e-14!4;UBERON:0010133!1.97e-14!4;UBERON:0000014!3.16e-14!4;UBERON:0002370!6.55e-14!4;UBERON:0005058!6.55e-14!4;UBERON:0009113!6.55e-14!4;UBERON:0003295!6.55e-14!4;UBERON:0005562!6.55e-14!4;UBERON:0009722!3.34e-11!11;UBERON:0007690!3.34e-11!11;UBERON:0000002!7.10e-10!6;UBERON:0001560!7.10e-10!6;UBERON:0003351!1.37e-09!6;UBERON:0002368!2.27e-09!35;UBERON:0001894!1.22e-08!7;UBERON:0006222!1.22e-08!7;UBERON:0008814!2.30e-08!15;UBERON:0004177!2.40e-08!7;UBERON:0006955!4.69e-08!2;UBERON:0004801!4.69e-08!2;UBERON:0000949!2.85e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;8.10e-26;2!UBERON:0002757;8.10e-26;2!UBERON:0010134;8.10e-26;2!UBERON:0005408;8.10e-26;2!UBERON:0001899;8.10e-26;2!UBERON:0003296;1.21e-13;4!UBERON:0010133;1.21e-13;4!UBERON:0002784;1.21e-13;4!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.16e-11;20!UBERON:0002104;1.53e-10;21!UBERON:0000020;1.02e-09;23!UBERON:0001032;2.35e-09;24!UBERON:0004456;2.35e-09;24!UBERON:0001894;2.26e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,9.18e-26,2;UBERON:0002757,9.18e-26,2;UBERON:0010134,9.18e-26,2;UBERON:0005408,9.18e-26,2;UBERON:0001899,9.18e-26,2;UBERON:0003296,1.29e-13,4;UBERON:0010133,1.29e-13,4;UBERON:0002784,1.29e-13,4;UBERON:0000970,1.53e-10,21;UBERON:0002104,1.53e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0000020,2.35e-09,24;UBERON:0001032,2.35e-09,24;UBERON:0004456,2.35e-09,24;UBERON:0001894,2.35e-08,7;UBERON:0006222,2.35e-08,7 | |||
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|short_description=p16@LENG8 | |short_description=p16@LENG8 | ||
}} | }} |
Latest revision as of 22:33, 19 September 2015
Short description: | p16@LENG8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_LENG8_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -13bp_to_ENST00000462541_5end |
EntrezGene: | LENG8 |
HGNC: | 15500 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.69e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
pineal body | 9.18e-26 | 2 |
regional part of epithalamus | 9.18e-26 | 2 |
secretory circumventricular organ | 9.18e-26 | 2 |
circumventricular organ | 9.18e-26 | 2 |
epithalamus | 9.18e-26 | 2 |
gland of diencephalon | 1.29e-13 | 4 |
neuroendocrine gland | 1.29e-13 | 4 |
regional part of diencephalon | 1.29e-13 | 4 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
diencephalon | 2.35e-08 | 7 |
future diencephalon | 2.35e-08 | 7 |