FFCP PHASE1:Hg19::chr22:33257408..33257422,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7078 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11822 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-157bp_to_AF035289_5end | |||
|cluster_id=chr22:33257408..33257422,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_30_at_TIMP3_5end | |||
|id=chr22:33257408..33257422,+ | |||
|ontology_enrichment_celltype=CL:0002334!8.57e-08!12;CL:0000055!5.56e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002541;3.84e-13;3!CL:0002581;2.47e-10;1!CL:0002616;2.47e-10;1!CL:0002591;6.05e-10;1!CL:0002379;6.05e-10;1!CL:0002595;5.39e-08;5!CL:0002537;8.31e-08;5!CL:0000349;1.19e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.85e-13,3;CL:0002581,2.16e-10,1;CL:0002616,2.59e-10,1;CL:0002379,8.99e-10,1;CL:0002591,9.82e-10,1;CL:0002595,5.49e-08,5;CL:0002537,8.61e-08,5;CL:0000349,1.22e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0005754;2.47e-10;1!UBERON:0004874;6.05e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;6.05e-10;1!DOID:3565;6.05e-10;1!DOID:2513;6.05e-10;1!DOID:3369;6.05e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3369,4.06e-10,1;DOID:2513,6.91e-10,1;DOID:3620,8.99e-10,1;DOID:3565,8.99e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0004923!4.19e-09!57;UBERON:0005631!7.86e-08!14;UBERON:0000158!7.86e-08!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0005406;6.41e-19;2!UBERON:0005631;2.16e-14;10!UBERON:0000158;2.16e-14;10!UBERON:0003124;3.84e-13;3!UBERON:0000920;3.84e-13;3!UBERON:0003513;7.83e-12;7!UBERON:0000998;2.47e-10;1!UBERON:0002135;2.47e-10;1!UBERON:0006868;2.47e-10;1!UBERON:0000989;6.05e-10;1!UBERON:0008811;6.05e-10;1!UBERON:0003834;5.39e-08;5!UBERON:0001533;5.39e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005406,5.88e-19,2;UBERON:0000920,3.85e-13,3;UBERON:0003513,7.84e-12,7;UBERON:0002135,2.37e-10,1;UBERON:0005631,2.54e-10,14;UBERON:0000158,2.54e-10,14;UBERON:0000998,2.84e-10,1;UBERON:0006868,2.84e-10,1;UBERON:0000989,4.44e-10,1;UBERON:0008811,4.44e-10,1;UBERON:0006258,4.44e-10,1;UBERON:0005876,4.44e-10,1;UBERON:0004874,4.44e-10,1;UBERON:0003834,5.49e-08,5;UBERON:0001533,5.49e-08,5;UBERON:0004923,1.77e-07,66 | |||
|phase1_expression=0,0.856402095563933,0.140954404095971,1.0007329835313,0,2.61701557230111,0,0,0,0.245733936501509,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,1.45990461090791,0,0.443458794925128,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0.70296429550139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0.358779271377724,0.640672166455702,0,0.300091096084402,0,0,0,0.168776332241266,0.389748020644795,0.252433774244115,0.0920498986422993,0.484938170456436,0.355009592516614,0.10075209822764,0.339121184620975,0,0,0,0,0,0,0,0,0,1.56449532329816,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0.977424915930974,0,0,0,0,0,0.925971025153221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,1.71072446022705,0.205654985406647,0.901029173531752,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.256278298511402,1.53512174720011,0.160853921143607,2.96836132889982,0.462629081407967,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0,0,0.31481234683064,0,0.308033580176089,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0.974853958525138,3.16950440270266,0,0.141405431953713,1.13008116620243,0.551365343546124,0,1.31535265576129,0,0.655894752046633,0,0,0.281695602532241,0,0.0982490410131212,0,0,0,0.658589785919804,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,1.43246690842614,0.593929361665277,1.22864280839693,0,0,0,0,0,0.19924798825107,0,0,0.102268682502155,0,1.24415835064723,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,6.06102203490647,0.366390373607449,7.46248686426089,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.426905989478705,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,2.79282401272254,0.229160424011684,0,0.199679000498991,0.429226048136571,0.669514372325618,0.0671834724867263,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0.226624183040251,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.110929051536852,0,0,0,0,0,1.17632909849086,0,0,0,0,0,0.378806010550178,0.50313580350515,0,0.228840068396924,0,0.310874401165561,0.147855149989634,0,0,0,0,1.06336685823198,0,0.300515217994437,0,1.22061219961398,0,0,0,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0.308801447160972,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0.318004350653419,0,0,0.705351887381368,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0.620916591138472,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.857718530119876,0,0,0,0,0,0,0,0,0,0,2.54032230114557,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0.849635573439084,0,0.128915775947154,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0.743990036333503,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0,0.217716747896961,0.342233301085281,0.0673520530145875,0.0717222053926763,0.332660356546013,0.0814032686109745,0,0,0,0,0.366724332548599,0,0,0,0 | |||
|short_description=p30@TIMP3 | |||
}} |
Latest revision as of 22:55, 19 September 2015
Short description: | p30@TIMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_30_at_TIMP3_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -157bp_to_AF035289_5end |
EntrezGene: | TIMP3 |
HGNC: | 11822 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.85e-13 | 3 |
perirenal preadipocyte | 2.16e-10 | 1 |
perirenal adipocyte cell | 2.59e-10 | 1 |
meningothelial cell | 8.99e-10 | 1 |
smooth muscle cell of the pulmonary artery | 9.82e-10 | 1 |
smooth muscle cell of the subclavian artery | 5.49e-08 | 5 |
amnion mesenchymal stem cell | 8.61e-08 | 5 |
extraembryonic cell | 1.22e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
perirenal fat | 5.88e-19 | 2 |
egg chorion | 3.85e-13 | 3 |
trunk blood vessel | 7.84e-12 | 7 |
mitral valve | 2.37e-10 | 1 |
extraembryonic membrane | 2.54e-10 | 14 |
membranous layer | 2.54e-10 | 14 |
seminal vesicle | 2.84e-10 | 1 |
seminal fluid secreting gland | 2.84e-10 | 1 |
penis | 4.44e-10 | 1 |
intromittent organ | 4.44e-10 | 1 |
lateral plate mesenchyme | 4.44e-10 | 1 |
undifferentiated genital tubercle | 4.44e-10 | 1 |
somatopleure | 4.44e-10 | 1 |
thoracic segment blood vessel | 5.49e-08 | 5 |
subclavian artery | 5.49e-08 | 5 |
organ component layer | 1.77e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
peripheral primitive neuroectodermal tumor | 4.06e-10 | 1 |
basal cell carcinoma | 6.91e-10 | 1 |
central nervous system cancer | 8.99e-10 | 1 |
meningioma | 8.99e-10 | 1 |