FFCP PHASE1:Hg19::chr10:92654428..92654434,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10556 | |EntrezGene=10556 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17688 | |HGNC=17688 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-97bp_to_ENST00000489806_5end | |association_with_transcript=-97bp_to_ENST00000489806_5end | ||
|cluster_id=chr10:92654428..92654434,+ | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_5_at_RPP30_5end | |description=CAGE_peak_5_at_RPP30_5end | ||
|id=chr10:92654428..92654434,+ | |id=chr10:92654428..92654434,+ | ||
|ontology_enrichment_celltype=CL:0000746!9.46e-18!3;CL:0000513!9.46e-18!3;CL:0000737!1.13e-13!4 | |ontology_enrichment_celltype=CL:0000746!9.46e-18!3;CL:0000513!9.46e-18!3;CL:0000737!1.13e-13!4 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.39e-66;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!5.56e-26!2;UBERON:0002757!5.56e-26!2;UBERON:0010134!5.56e-26!2;UBERON:0002784!5.56e-26!2;UBERON:0005408!5.56e-26!2;UBERON:0001899!5.56e-26!2;UBERON:0001896!1.12e-17!3;UBERON:0005290!1.12e-17!3;UBERON:0010096!1.12e-17!3;UBERON:0003296!1.00e-13!4;UBERON:0010133!1.00e-13!4;UBERON:0000966!2.66e-11!5;UBERON:0005388!2.66e-11!5;UBERON:0001802!2.66e-11!5;UBERON:0001894!2.03e-08!7;UBERON:0006222!2.03e-08!7;UBERON:0002298!1.80e-07!8 | |ontology_enrichment_uberon=UBERON:0001905!5.56e-26!2;UBERON:0002757!5.56e-26!2;UBERON:0010134!5.56e-26!2;UBERON:0002784!5.56e-26!2;UBERON:0005408!5.56e-26!2;UBERON:0001899!5.56e-26!2;UBERON:0001896!1.12e-17!3;UBERON:0005290!1.12e-17!3;UBERON:0010096!1.12e-17!3;UBERON:0003296!1.00e-13!4;UBERON:0010133!1.00e-13!4;UBERON:0000966!2.66e-11!5;UBERON:0005388!2.66e-11!5;UBERON:0001802!2.66e-11!5;UBERON:0001894!2.03e-08!7;UBERON:0006222!2.03e-08!7;UBERON:0002298!1.80e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.48e-40;5!UBERON:0005388;1.48e-40;5!UBERON:0001802;1.48e-40;5!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.27e-34,6;UBERON:0005388,4.27e-34,6;UBERON:0001802,4.27e-34,6;UBERON:0000019,2.29e-11,20;UBERON:0000047,2.29e-11,20;UBERON:0010312,2.29e-11,20;UBERON:0004088,2.29e-11,20;UBERON:0010230,2.29e-11,20;UBERON:0003072,2.29e-11,20;UBERON:0004128,2.29e-11,20;UBERON:0003071,2.29e-11,20;UBERON:0000970,6.74e-11,21;UBERON:0002104,6.74e-11,21;UBERON:0001456,1.80e-10,22;UBERON:0000020,1.01e-09,24;UBERON:0001032,1.01e-09,24;UBERON:0004456,1.01e-09,24;UBERON:0005085,7.41e-08,31 | |||
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|short_description=p5@RPP30 | |short_description=p5@RPP30 | ||
}} | }} |
Latest revision as of 23:24, 19 September 2015
Short description: | p5@RPP30 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RPP30_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -97bp_to_ENST00000489806_5end |
EntrezGene: | RPP30 |
HGNC: | 17688 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 4.27e-34 | 6 |
photoreceptor array | 4.27e-34 | 6 |
posterior segment of eyeball | 4.27e-34 | 6 |
camera-type eye | 2.29e-11 | 20 |
simple eye | 2.29e-11 | 20 |
immature eye | 2.29e-11 | 20 |
ocular region | 2.29e-11 | 20 |
eyeball of camera-type eye | 2.29e-11 | 20 |
optic cup | 2.29e-11 | 20 |
optic vesicle | 2.29e-11 | 20 |
eye primordium | 2.29e-11 | 20 |
eye | 6.74e-11 | 21 |
visual system | 6.74e-11 | 21 |
face | 1.80e-10 | 22 |
sense organ | 1.01e-09 | 24 |
sensory system | 1.01e-09 | 24 |
entire sense organ system | 1.01e-09 | 24 |
ectodermal placode | 7.41e-08 | 31 |