FFCP PHASE1:Hg19::chr12:6982725..6982736,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10233 | |EntrezGene=10233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19138 | |HGNC=19138 | ||
|TSSclassifier=strong | |||
|UniProt=C9JKE8,Q5MD59 | |UniProt=C9JKE8,Q5MD59 | ||
|association_with_transcript=0bp_to_ENST00000433346,uc001qrn.1_5end | |association_with_transcript=0bp_to_ENST00000433346,uc001qrn.1_5end | ||
|cluster_id=chr12:6982725..6982736,+ | |||
|coexpression_cluster_id=C45 | |coexpression_cluster_id=C45 | ||
|description=CAGE_peak_9_at_LRRC23_5end | |description=CAGE_peak_9_at_LRRC23_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;3.84e-29;7!CL:0000586;3.84e-29;7!CL:0002363;2.59e-12;2!CL:0002504;1.21e-08;3!CL:1000279;1.21e-08;3!CL:0002592;1.21e-08;3!CL:1000280;1.21e-08;3 | |ontology_enrichment_celltype_v019=CL:0000039;3.84e-29;7!CL:0000586;3.84e-29;7!CL:0002363;2.59e-12;2!CL:0002504;1.21e-08;3!CL:1000279;1.21e-08;3!CL:0002592;1.21e-08;3!CL:1000280;1.21e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.85e-29,7;CL:0000586,3.85e-29,7;CL:0002363,3.62e-12,2;CL:0000008,3.62e-12,2;CL:0002592,9.66e-09,3;CL:0002504,1.30e-08,3;CL:1000279,1.30e-08,3;CL:1000280,1.30e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.20e-20;10!UBERON:0005564;1.20e-20;10!CL:0000008;2.59e-12;2!UBERON:0006215;1.21e-08;3 | |ontology_enrichment_development_v019=UBERON:0009117;1.20e-20;10!UBERON:0005564;1.20e-20;10!CL:0000008;2.59e-12;2!UBERON:0006215;1.21e-08;3 | ||
|ontology_enrichment_disease=DOID:305!6.21e-09!106;DOID:0050687!1.08e-08!143 | |ontology_enrichment_disease=DOID:305!6.21e-09!106;DOID:0050687!1.08e-08!143 | ||
|ontology_enrichment_disease_v019=DOID:3095;9.12e-10;22!DOID:2994;9.12e-10;22 | |ontology_enrichment_disease_v019=DOID:3095;9.12e-10;22!DOID:2994;9.12e-10;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,9.12e-10,22;DOID:2994,9.12e-10,22 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.32e-25;8!UBERON:0003135;7.67e-19;11!UBERON:0003566;2.59e-12;2!UBERON:0001777;2.59e-12;2!UBERON:0000991;3.35e-10;21!UBERON:0003101;9.12e-10;22!UBERON:0000079;9.12e-10;22!UBERON:0002369;1.21e-08;3!UBERON:0001235;1.21e-08;3!UBERON:0003498;1.21e-08;3!UBERON:0006858;1.21e-08;3!UBERON:0005985;1.21e-08;3!UBERON:0001621;1.21e-08;3!UBERON:0003891;8.61e-07;4!UBERON:0000964;8.61e-07;4!UBERON:0010409;8.61e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000473;1.32e-25;8!UBERON:0003135;7.67e-19;11!UBERON:0003566;2.59e-12;2!UBERON:0001777;2.59e-12;2!UBERON:0000991;3.35e-10;21!UBERON:0003101;9.12e-10;22!UBERON:0000079;9.12e-10;22!UBERON:0002369;1.21e-08;3!UBERON:0001235;1.21e-08;3!UBERON:0003498;1.21e-08;3!UBERON:0006858;1.21e-08;3!UBERON:0005985;1.21e-08;3!UBERON:0001621;1.21e-08;3!UBERON:0003891;8.61e-07;4!UBERON:0000964;8.61e-07;4!UBERON:0010409;8.61e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.32e-25,8;UBERON:0003135,7.68e-19,11;UBERON:0003566,3.62e-12,2;UBERON:0001777,3.62e-12,2;UBERON:0000991,3.35e-10,21;UBERON:0009196,3.35e-10,21;UBERON:0009117,3.35e-10,21;UBERON:0005564,3.35e-10,21;UBERON:0004176,9.12e-10,22;UBERON:0003101,9.12e-10,22;UBERON:0000079,9.12e-10,22;UBERON:0001621,9.66e-09,3;UBERON:0002369,1.40e-08,3;UBERON:0001235,1.40e-08,3;UBERON:0006858,1.40e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0.408001382488506,0,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,1.35426486594342,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0.222820913770347,0.294605907474837,0,0,0.25618263945135,0.260118695119756,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0.26591592103773,0,0.571994910780128,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0.311211035399766,0.269421344139376,0.163461903113459,0.151357427644931,0,0.468642863667593,0.312160076830321,0,0,0.23486899728753,0,0,0.204154171254893,0.245668634623536,0,0,0.247266929278557,0,0,0,0,0.831192346452549,0.438977620880838,0.30648779579902,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0,0,0,0,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.110293972732394,0.217879444092406,0,0.134831308160164,0.196221465125346,0.38474715694639,0.738155454624648,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,1.03993478527958,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.448340575974109,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0.116210378459959,0,0,0,0.114814448164607,0.546273504020151,0.131124414959424,0.451199612907412,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,0,0,0.270946437543853,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0.307007349452259,0.137836572484531,0.214840489736547,0.145016693914229,0.170453254832202,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,1.09814811894422,0,0,1.58510321173008,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.106824071127473,0.962479855263359,0,0.185803175125719,0.144269212976445,0.497992903438899,0.637705090915289,0,0,0,0,0,0,0,0,0,0.321176150207399,0.201799707191048,0,0,0,0,0,0,0,0,0.540911356951966,0.33307196799782,0,0,0,1.09224469574562,0,0,0,0.296964680832639,0,0,0,0.222617410045812,0,0,0,0.276283915531148,0.251932747854276,0.20453736500431,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0.236387681767936,0,0.291604613383254,0.173624994933292,0,0,1.52581736317083,0.552896299656123,0,0,0,0,0,0.113942055847001,0.23056390438806,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0.392125068635479,0,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0.150323419414493,0.103688191397247,0,0.330991955875499,0,0,0,0,0,0,0.174118413160805,0,0,0,0.146178634172371,0.164230914106418,0,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0,0,0,0.144090417154106,0.114536596165916,0.343189995723929,0,0.124252535565433,0.235694034616795,0,0.104602846312333,0.203996435272644,0,0,0.136905378891993,0,0,0.525774708558629,0,0,0,0.199679000498991,0,0,0,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0.78741985211799,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0.121499113316049,0,0.0788057072991982,0.0524545881349981,0.316801009558219,0.179287339332845,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0.258565912723101,0,0.342173675768659,0,0.320362237703084,0.157204305099666,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.110929051536852,0,0.138348634936231,0.124980407962107,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0.57785949122191,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0.138258436151731,0,0.132864840313363,0,0,0,0,0,0,0,0,0.736423801007363,0,0,0.127894371303652,0.215649622793364,0,0,0.169732529954025,0,0.123935764259002,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0.115233987555779,0.171488009437418,0,0.131545547125698,0.118193840883968,0.111231401892069,0,0,0.280272163313789,0.913158720509496,0.215927591218621,0.47775168788705,0.214429632529969,0,0.464965701472501,0.521574816907738,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0.098150233615243,0,0,0.102662806856247,0,0,0,0.198950775161368,0,0.11294608203896,0.329821550236287,0.150962843566674,0,0,0,0.245148321753905,0,0,0.297046400327086,0,0,0.187967835959707,0,0,0,0,0,0,0.458729283404541,0,0.315543124386369,0.0679914901909147,0,0.5290268405154,0,0,0,0.126166424835079,0.437062287854782,0.633492505057185,1.32585478664576,2.13773924212448,12.1301267385995,0.250707539292375,0.682008283964155,0.535928260312357,0,0,0,0,0,0.31037357147929,0.33639558774184,0.190941474834495,0.202117188958219,0,0,0.134704106029175,0,0,0,0.213454691755431,0,0.0898252021065869,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0.408001382488506,0,0.286235987131057,0.273748850145768,0.125542639594803,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,1.35426486594342,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0.222820913770347,0.294605907474837,0,0,0.25618263945135,0.260118695119756,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0.26591592103773,0,0.571994910780128,0.371457501329565,0.198762407366705,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0.311211035399766,0.269421344139376,0.163461903113459,0.151357427644931,0,0.468642863667593,0.312160076830321,0,0,0.23486899728753,0,0,0.204154171254893,0.245668634623536,0,0,0.247266929278557,0,0,0,0,0.831192346452549,0.438977620880838,0.30648779579902,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0,0,0,0,0,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.110293972732394,0.217879444092406,0,0.134831308160164,0.196221465125346,0.38474715694639,0.738155454624648,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,0,0,0,0,1.03993478527958,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0.102827492703324,0,0,0.224262168690721,0,0,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.448340575974109,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0.116210378459959,0,0,0,0.114814448164607,0.546273504020151,0.131124414959424,0.451199612907412,0.15403067420883,0,0,0.211103257785751,0,0.170093705276516,0,0,0.270946437543853,0,0.254876273045038,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0.307007349452259,0.137836572484531,0.214840489736547,0.145016693914229,0.170453254832202,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,1.09814811894422,0,0,1.58510321173008,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.106824071127473,0.962479855263359,0,0.185803175125719,0.144269212976445,0.497992903438899,0.637705090915289,0,0,0,0,0,0,0,0,0,0.321176150207399,0.201799707191048,0,0,0,0,0,0,0,0,0.540911356951966,0.33307196799782,0,0,0,1.09224469574562,0,0,0,0.296964680832639,0,0,0,0.222617410045812,0,0,0,0.276283915531148,0.251932747854276,0.20453736500431,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0.236387681767936,0,0.291604613383254,0.173624994933292,0,0,1.52581736317083,0.552896299656123,0,0,0,0,0,0.113942055847001,0.23056390438806,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0.392125068635479,0,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,0,0,0,0,0.150323419414493,0.103688191397247,0,0.330991955875499,0,0,0,0,0,0,0.174118413160805,0,0,0,0.146178634172371,0.164230914106418,0,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0,0,0,0.144090417154106,0.114536596165916,0.343189995723929,0,0.124252535565433,0.235694034616795,0,0.104602846312333,0.203996435272644,0,0,0.136905378891993,0,0,0.525774708558629,0,0,0,0.199679000498991,0,0,0,0,0,0.157566364614447,0.164831716762333,0.13480708770837,0.78741985211799,0.0846733320657845,0,0,0,0.137539436597234,0,0,0,0.121499113316049,0,0.0788057072991982,0.0524545881349981,0.316801009558219,0.179287339332845,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0.258565912723101,0,0.342173675768659,0,0.320362237703084,0.157204305099666,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0.122026264901963,0.250381861413,0,0.110929051536852,0,0.138348634936231,0.124980407962107,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0.336749488765919,0,0.57785949122191,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0.138258436151731,0,0.132864840313363,0,0,0,0,0,0,0,0,0.736423801007363,0,0,0.127894371303652,0.215649622793364,0,0,0.169732529954025,0,0.123935764259002,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0.183428598521679,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0.227662191351298,0,0.115233987555779,0.171488009437418,0,0.131545547125698,0.118193840883968,0.111231401892069,0,0,0.280272163313789,0.913158720509496,0.215927591218621,0.47775168788705,0.214429632529969,0,0.464965701472501,0.521574816907738,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0.098150233615243,0,0,0.102662806856247,0,0,0,0.198950775161368,0,0.11294608203896,0.329821550236287,0.150962843566674,0,0,0,0.245148321753905,0,0,0.297046400327086,0,0,0.187967835959707,0,0,0,0,0,0,0.458729283404541,0,0.315543124386369,0.0679914901909147,0,0.5290268405154,0,0,0,0.126166424835079,0.437062287854782,0.633492505057185,1.32585478664576,2.13773924212448,12.1301267385995,0.250707539292375,0.682008283964155,0.535928260312357,0,0,0,0,0,0.31037357147929,0.33639558774184,0.190941474834495,0.202117188958219,0,0,0.134704106029175,0,0,0,0.213454691755431,0,0.0898252021065869,0,0,0,0,0.402547587182052,0 | ||
|short_description=p9@LRRC23 | |short_description=p9@LRRC23 | ||
}} | }} |
Latest revision as of 06:02, 20 September 2015
Short description: | p9@LRRC23 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LRRC23_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | 0bp_to_ENST00000433346, uc001qrn.1_5end |
EntrezGene: | LRRC23 |
HGNC: | 19138 |
UniProt: | C9JKE8Q5MD59 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.85e-29 | 7 |
germ cell | 3.85e-29 | 7 |
keratocyte | 3.62e-12 | 2 |
migratory cranial neural crest cell | 3.62e-12 | 2 |
smooth muscle cell of the coronary artery | 9.66e-09 | 3 |
enteric smooth muscle cell | 1.30e-08 | 3 |
smooth muscle cell of large intestine | 1.30e-08 | 3 |
smooth muscle cell of colon | 1.30e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.32e-25 | 8 |
male reproductive organ | 7.68e-19 | 11 |
head connective tissue | 3.62e-12 | 2 |
substantia propria of cornea | 3.62e-12 | 2 |
gonad | 3.35e-10 | 21 |
indifferent external genitalia | 3.35e-10 | 21 |
indifferent gonad | 3.35e-10 | 21 |
gonad primordium | 3.35e-10 | 21 |
external genitalia | 9.12e-10 | 22 |
male organism | 9.12e-10 | 22 |
male reproductive system | 9.12e-10 | 22 |
coronary artery | 9.66e-09 | 3 |
adrenal gland | 1.40e-08 | 3 |
adrenal cortex | 1.40e-08 | 3 |
adrenal/interrenal gland | 1.40e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.12e-10 | 22 |
germ cell cancer | 9.12e-10 | 22 |