FFCP PHASE1:Hg19::chr9:116917807..116917831,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=85301 | |EntrezGene=85301 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=22986 | |HGNC=22986 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q8IZC6 | |UniProt=Q8IZC6 | ||
|association_with_transcript=-8bp_to_ENST00000356083_5end | |association_with_transcript=-8bp_to_ENST00000356083_5end | ||
|cluster_id=chr9:116917807..116917831,+ | |||
|description=CAGE_peak_1_at_COL27A1_5end | |description=CAGE_peak_1_at_COL27A1_5end | ||
|id=chr9:116917807..116917831,+ | |id=chr9:116917807..116917831,+ | ||
Latest revision as of 07:53, 20 September 2015
| Short description: | p1@COL27A1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_COL27A1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -8bp_to_ENST00000356083_5end |
| EntrezGene: | COL27A1 |
| HGNC: | 22986 |
| UniProt: | Q8IZC6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@COL27A1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 1.43e-14 | 250 |
| ectodermal cell | 3.41e-09 | 72 |
| fibroblast | 2.96e-07 | 76 |
| neurectodermal cell | 5.83e-07 | 59 |
| glial cell (sensu Vertebrata) | 6.20e-07 | 15 |
| glial cell | 6.20e-07 | 15 |
| glioblast | 6.20e-07 | 15 |
| glioblast (sensu Vertebrata) | 6.20e-07 | 15 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| surface structure | 2.65e-12 | 99 |
| cell layer | 5.92e-12 | 309 |
| epithelium | 7.67e-12 | 306 |
| anatomical conduit | 1.91e-09 | 240 |
| ectoderm-derived structure | 3.33e-08 | 171 |
| ectoderm | 3.33e-08 | 171 |
| presumptive ectoderm | 3.33e-08 | 171 |
| skin of body | 2.33e-07 | 41 |
| integument | 9.48e-07 | 46 |
| integumental system | 9.48e-07 | 46 |
Showing 1 to 10 of 10 entries
