FFCP PHASE1:Hg19::chr12:71148329..71148334,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5801 | |EntrezGene=5801 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9680 | |HGNC=9680 | ||
|TSSclassifier=strong | |||
|UniProt=Q15256 | |UniProt=Q15256 | ||
|association_with_transcript=30bp_to_uc001swh.1_5end | |association_with_transcript=30bp_to_uc001swh.1_5end | ||
|cluster_id=chr12:71148329..71148334,- | |||
|coexpression_cluster_id=C1684 | |coexpression_cluster_id=C1684 | ||
|description=CAGE_peak_15_at_PTPRR_5end | |description=CAGE_peak_15_at_PTPRR_5end | ||
|id=chr12:71148329..71148334,- | |id=chr12:71148329..71148334,- | ||
|ontology_enrichment_celltype=CL:0002541!4.94e-12!3;CL:0000159!1.03e-08!2 | |ontology_enrichment_celltype=CL:0002541!4.94e-12!3;CL:0000159!1.03e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:1000415;3.11e-21;2!CL:0002541;1.60e-14;3!CL:0002149;6.34e-08;6!CL:0002255;6.34e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,3.11e-21,2;CL:0002541,1.83e-14,3;CL:0002149,5.92e-08,6;CL:0002255,5.92e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3001;6.34e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.92e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.97e-21!57;UBERON:0005068!2.97e-21!57;UBERON:0006241!2.97e-21!57;UBERON:0007135!2.97e-21!57;UBERON:0002616!2.27e-20!59;UBERON:0002780!3.46e-20!41;UBERON:0001890!3.46e-20!41;UBERON:0006240!3.46e-20!41;UBERON:0003080!1.28e-19!42;UBERON:0000955!3.59e-18!69;UBERON:0006238!3.59e-18!69;UBERON:0001869!1.82e-17!32;UBERON:0007023!6.86e-17!115;UBERON:0001893!2.77e-16!34;UBERON:0002020!2.81e-16!34;UBERON:0003528!2.81e-16!34;UBERON:0002619!3.81e-16!22;UBERON:0001950!9.39e-15!20;UBERON:0001017!1.58e-14!82;UBERON:0002791!2.00e-14!33;UBERON:0000956!5.12e-14!25;UBERON:0000203!5.12e-14!25;UBERON:0005743!1.26e-13!86;UBERON:0003075!1.83e-12!86;UBERON:0007284!1.83e-12!86;UBERON:0003056!2.33e-12!61;UBERON:0000476!4.94e-12!3;UBERON:0000920!4.94e-12!3;UBERON:0000073!7.06e-12!94;UBERON:0001016!7.06e-12!94;UBERON:0002346!1.07e-11!90;UBERON:0000200!1.38e-09!6;UBERON:0003296!3.39e-09!4;UBERON:0010133!3.39e-09!4;UBERON:0001905!8.23e-09!2;UBERON:0002757!8.23e-09!2;UBERON:0010134!8.23e-09!2;UBERON:0002784!8.23e-09!2;UBERON:0005408!8.23e-09!2;UBERON:0001899!8.23e-09!2;UBERON:0000064!8.34e-09!219;UBERON:0000059!1.78e-08!11;UBERON:0005409!2.56e-08!35;UBERON:0000033!4.30e-08!123;UBERON:0001255!5.74e-08!2;UBERON:0001556!5.74e-08!2;UBERON:0000153!1.68e-07!129;UBERON:0007811!1.68e-07!129;UBERON:0004907!2.08e-07!5;UBERON:0000160!2.41e-07!27;UBERON:0003350!3.86e-07!5;UBERON:0001155!7.35e-07!9;UBERON:0001872!8.16e-07!5 | |ontology_enrichment_uberon=UBERON:0001049!2.97e-21!57;UBERON:0005068!2.97e-21!57;UBERON:0006241!2.97e-21!57;UBERON:0007135!2.97e-21!57;UBERON:0002616!2.27e-20!59;UBERON:0002780!3.46e-20!41;UBERON:0001890!3.46e-20!41;UBERON:0006240!3.46e-20!41;UBERON:0003080!1.28e-19!42;UBERON:0000955!3.59e-18!69;UBERON:0006238!3.59e-18!69;UBERON:0001869!1.82e-17!32;UBERON:0007023!6.86e-17!115;UBERON:0001893!2.77e-16!34;UBERON:0002020!2.81e-16!34;UBERON:0003528!2.81e-16!34;UBERON:0002619!3.81e-16!22;UBERON:0001950!9.39e-15!20;UBERON:0001017!1.58e-14!82;UBERON:0002791!2.00e-14!33;UBERON:0000956!5.12e-14!25;UBERON:0000203!5.12e-14!25;UBERON:0005743!1.26e-13!86;UBERON:0003075!1.83e-12!86;UBERON:0007284!1.83e-12!86;UBERON:0003056!2.33e-12!61;UBERON:0000476!4.94e-12!3;UBERON:0000920!4.94e-12!3;UBERON:0000073!7.06e-12!94;UBERON:0001016!7.06e-12!94;UBERON:0002346!1.07e-11!90;UBERON:0000200!1.38e-09!6;UBERON:0003296!3.39e-09!4;UBERON:0010133!3.39e-09!4;UBERON:0001905!8.23e-09!2;UBERON:0002757!8.23e-09!2;UBERON:0010134!8.23e-09!2;UBERON:0002784!8.23e-09!2;UBERON:0005408!8.23e-09!2;UBERON:0001899!8.23e-09!2;UBERON:0000064!8.34e-09!219;UBERON:0000059!1.78e-08!11;UBERON:0005409!2.56e-08!35;UBERON:0000033!4.30e-08!123;UBERON:0001255!5.74e-08!2;UBERON:0001556!5.74e-08!2;UBERON:0000153!1.68e-07!129;UBERON:0007811!1.68e-07!129;UBERON:0004907!2.08e-07!5;UBERON:0000160!2.41e-07!27;UBERON:0003350!3.86e-07!5;UBERON:0001155!7.35e-07!9;UBERON:0001872!8.16e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;6.96e-21;2!UBERON:0002757;6.96e-21;2!UBERON:0010134;6.96e-21;2!UBERON:0005408;6.96e-21;2!UBERON:0001899;6.96e-21;2!UBERON:0002110;1.22e-14;3!UBERON:0003124;1.60e-14;3!UBERON:0000920;1.60e-14;3!UBERON:0001052;3.10e-11;4!UBERON:0003296;3.79e-11;4!UBERON:0010133;3.79e-11;4!UBERON:0002784;3.79e-11;4!UBERON:0004907;2.97e-09;5!UBERON:0002294;5.08e-07;7!UBERON:0001173;5.08e-07;7!UBERON:0001894;6.39e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.96e-21,2;UBERON:0002757,6.96e-21,2;UBERON:0010134,6.96e-21,2;UBERON:0005408,6.96e-21,2;UBERON:0001899,6.96e-21,2;UBERON:0002110,1.22e-14,3;UBERON:0006242,1.22e-14,3;UBERON:0000920,1.83e-14,3;UBERON:0001052,3.10e-11,4;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0002784,3.79e-11,4;UBERON:0004907,2.97e-09,5;UBERON:0003124,6.04e-07,7;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0,0.23874448473769,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0.539210106883961,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0.183195186803725,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.265372693510018,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0.126621591911757,5.47543871657448,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0.191915197319445,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.126831620387814,0,0,0,0,0,1.07140367175657,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0,0,0.131545547125698,0,0,0,0.157115589916002,2.24217730651031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52017555398455,0,0,0.894843454382338,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358611026963382,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445773537109913,0,0.23874448473769,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0.539210106883961,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0.183195186803725,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.265372693510018,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0.126621591911757,5.47543871657448,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0.191915197319445,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0.205116364240755,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0.126831620387814,0,0,0,0,0,1.07140367175657,0.336283722218824,0,0.227662191351298,0,0.115233987555779,0,0,0.131545547125698,0,0,0,0.157115589916002,2.24217730651031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52017555398455,0,0,0.894843454382338,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271965960763659,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358611026963382,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p15@PTPRR | |short_description=p15@PTPRR | ||
}} | }} |
Latest revision as of 16:16, 24 September 2015
Short description: | p15@PTPRR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_PTPRR_5end |
Coexpression cluster: | C1684_serous_gall_rectal_colon_chorionic_adult_non |
Association with transcript: | 30bp_to_uc001swh.1_5end |
EntrezGene: | PTPRR |
HGNC: | 9680 |
UniProt: | Q15256 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 3.11e-21 | 2 |
chorionic membrane mesenchymal stem cell | 1.83e-14 | 3 |
epithelial cell of uterus | 5.92e-08 | 6 |
stromal cell of endometrium | 5.92e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
pineal body | 6.96e-21 | 2 |
regional part of epithalamus | 6.96e-21 | 2 |
secretory circumventricular organ | 6.96e-21 | 2 |
circumventricular organ | 6.96e-21 | 2 |
epithalamus | 6.96e-21 | 2 |
gallbladder | 1.22e-14 | 3 |
gall bladder primordium | 1.22e-14 | 3 |
egg chorion | 1.83e-14 | 3 |
rectum | 3.10e-11 | 4 |
gland of diencephalon | 3.79e-11 | 4 |
neuroendocrine gland | 3.79e-11 | 4 |
regional part of diencephalon | 3.79e-11 | 4 |
lower digestive tract | 2.97e-09 | 5 |
chorion | 6.04e-07 | 7 |
diencephalon | 6.39e-07 | 7 |
future diencephalon | 6.39e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.92e-08 | 6 |