FFCP PHASE1:Hg19::chr19:6680204..6680234,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:6680204..6680234,- to FFCP PHASE1:Hg19::chr19:6680204..6680234,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=718 | |EntrezGene=718 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1318 | |HGNC=1318 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-42bp_to_ENST00000482039_5end | |||
|cluster_id=chr19:6680204..6680234,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_8_at_C3_5end | |||
|id=chr19:6680204..6680234,- | |||
|ontology_enrichment_celltype=CL:0000181!2.03e-07!12;CL:0000417!2.03e-07!12;CL:0000668!2.03e-07!12;CL:0000414!2.03e-07!12;CL:0000412!2.03e-07!12;CL:0000182!2.03e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0001014;1.44e-15;2!CL:0001016;1.44e-15;2!CL:0000235;9.94e-12;6!CL:0000182;4.45e-10;12!CL:0000453;9.70e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,1.00e-15,2;CL:0001016,1.00e-15,2;CL:0000235,1.01e-11,6;CL:0000182,4.10e-10,12;CL:0002009,5.46e-08,61;CL:0000557,3.65e-07,67;CL:0000453,8.41e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.46e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.16e-10!115;UBERON:0009497!1.03e-08!25;UBERON:0000015!1.03e-08!25;UBERON:0002423!1.03e-08!25;UBERON:0006235!1.03e-08!25;UBERON:0004161!1.03e-08!25;UBERON:0005172!2.56e-08!55;UBERON:0005173!2.56e-08!55;UBERON:0002365!3.51e-08!31;UBERON:0002330!3.51e-08!31;UBERON:0002107!7.18e-08!19;UBERON:0006925!7.18e-08!19;UBERON:0008836!7.18e-08!19;UBERON:0002050!1.31e-07!605;UBERON:0005423!1.31e-07!605;UBERON:0002530!1.45e-07!59;UBERON:0000926!2.52e-07!448;UBERON:0004120!2.52e-07!448;UBERON:0006603!2.52e-07!448;UBERON:0003914!2.58e-07!118;UBERON:0009854!2.74e-07!23;UBERON:0000923!2.97e-07!604;UBERON:0005291!2.97e-07!604;UBERON:0006598!2.97e-07!604;UBERON:0002532!2.97e-07!604;UBERON:0000062!3.50e-07!511;UBERON:0004111!3.53e-07!241;UBERON:0000922!3.80e-07!612;UBERON:0002417!7.30e-07!61;UBERON:0000916!7.30e-07!61;UBERON:0000467!8.66e-07!625;UBERON:0000468!9.29e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;1.45e-13;25!UBERON:0002107;1.59e-13;19!UBERON:0006925;1.59e-13;19!UBERON:0002365;2.55e-10;31!UBERON:0002330;2.55e-10;31!UBERON:0001154;2.46e-08;1!UBERON:0000996;2.46e-08;1!UBERON:0001153;2.46e-08;1!UBERON:0001282;2.46e-08;1!UBERON:0007195;2.46e-08;1!UBERON:0009854;2.46e-08;1!UBERON:0009842;2.46e-08;1!UBERON:0003704;2.46e-08;1!UBERON:0001171;2.46e-08;1!UBERON:0001172;2.46e-08;1!UBERON:0002368;5.55e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009854,7.75e-15,23;UBERON:0009497,1.19e-13,25;UBERON:0000015,1.19e-13,25;UBERON:0002423,1.19e-13,25;UBERON:0006235,1.19e-13,25;UBERON:0004161,1.19e-13,25;UBERON:0002107,1.44e-13,19;UBERON:0006925,1.44e-13,19;UBERON:0008836,1.44e-13,19;UBERON:0009856,4.96e-13,26;UBERON:0008835,1.20e-11,22;UBERON:0003894,1.20e-11,22;UBERON:0002365,7.44e-11,31;UBERON:0002330,7.44e-11,31;UBERON:0007499,3.49e-10,25;UBERON:0001282,1.98e-08,1;UBERON:0009842,1.98e-08,1;UBERON:0003704,1.98e-08,1;UBERON:0001171,1.98e-08,1;UBERON:0001172,1.98e-08,1;UBERON:0000996,2.13e-08,1;UBERON:0007195,2.64e-08,1;UBERON:0001154,2.84e-08,1;UBERON:0001153,2.84e-08,1;UBERON:0001045,2.84e-08,1;UBERON:0002371,1.25e-07,76;UBERON:0005172,1.45e-07,54;UBERON:0005173,1.45e-07,54;UBERON:0002368,4.08e-07,35;UBERON:0001474,5.82e-07,82 | |||
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| ||
|short_description=p8@C3 | |||
}} | }} |
Latest revision as of 17:52, 24 September 2015
Short description: | p8@C3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_C3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -42bp_to_ENST00000482039_5end |
EntrezGene: | C3 |
HGNC: | 1318 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 1.00e-15 | 2 |
immature CD1a-positive Langerhans cell | 1.00e-15 | 2 |
macrophage | 1.01e-11 | 6 |
hepatocyte | 4.10e-10 | 12 |
macrophage dendritic cell progenitor | 5.46e-08 | 61 |
granulocyte monocyte progenitor cell | 3.65e-07 | 67 |
Langerhans cell | 8.41e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
digestive tract diverticulum | 7.75e-15 | 23 |
epithelium of foregut-midgut junction | 1.19e-13 | 25 |
anatomical boundary | 1.19e-13 | 25 |
hepatobiliary system | 1.19e-13 | 25 |
foregut-midgut junction | 1.19e-13 | 25 |
septum transversum | 1.19e-13 | 25 |
liver | 1.44e-13 | 19 |
digestive gland | 1.44e-13 | 19 |
liver bud | 1.44e-13 | 19 |
sac | 4.96e-13 | 26 |
hepatic diverticulum | 1.20e-11 | 22 |
liver primordium | 1.20e-11 | 22 |
exocrine gland | 7.44e-11 | 31 |
exocrine system | 7.44e-11 | 31 |
epithelial sac | 3.49e-10 | 25 |
intralobular bile duct | 1.98e-08 | 1 |
acinus | 1.98e-08 | 1 |
intrahepatic bile duct | 1.98e-08 | 1 |
portal lobule | 1.98e-08 | 1 |
hepatic acinus | 1.98e-08 | 1 |
vagina | 2.13e-08 | 1 |
stroma of bone marrow | 2.64e-08 | 1 |
vermiform appendix | 2.84e-08 | 1 |
caecum | 2.84e-08 | 1 |
midgut | 2.84e-08 | 1 |
bone marrow | 1.25e-07 | 76 |
abdomen element | 1.45e-07 | 54 |
abdominal segment element | 1.45e-07 | 54 |
endocrine gland | 4.08e-07 | 35 |
bone element | 5.82e-07 | 82 |