FFCP PHASE1:Hg19::chr7:1022811..1022824,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54905 | |EntrezGene=54905 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20243 | |HGNC=20243 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TAV3,A6NJ10 | |UniProt=Q8TAV3,A6NJ10 | ||
|association_with_transcript=-10bp_to_ENST00000308919,NM_017781,uc003sjq.1,uc003sjr.1_5end | |association_with_transcript=-10bp_to_ENST00000308919,NM_017781,uc003sjq.1,uc003sjr.1_5end | ||
|cluster_id=chr7:1022811..1022824,+ | |||
|coexpression_cluster_id=C2364 | |coexpression_cluster_id=C2364 | ||
|description=CAGE_peak_1_at_CYP2W1_5end | |description=CAGE_peak_1_at_CYP2W1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000349!3.46e-07!3;CL:0002577!3.46e-07!3;CL:0002586!5.85e-07!3 | |ontology_enrichment_celltype=CL:0000349!3.46e-07!3;CL:0002577!3.46e-07!3;CL:0002586!5.85e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;3.92e-18;19!CL:0002577;2.98e-17;3!CL:0000575;1.40e-12;2!CL:0002537;2.74e-11;5!CL:0002586;2.59e-08;3!CL:0002252;4.99e-07;1 | |ontology_enrichment_celltype_v019=CL:0000349;3.92e-18;19!CL:0002577;2.98e-17;3!CL:0000575;1.40e-12;2!CL:0002537;2.74e-11;5!CL:0002586;2.59e-08;3!CL:0002252;4.99e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.49e-18,19;CL:0002577,2.38e-17,3;CL:0000575,1.44e-12,2;CL:0002537,2.69e-11,5;CL:0002586,2.96e-08,3;CL:0002252,5.14e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.23e-07;1 | |ontology_enrichment_development_v019=UBERON:0000358;2.23e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.89e-12!169;UBERON:0000925!3.89e-12!169;UBERON:0006595!3.89e-12!169;UBERON:0005631!5.98e-11!14;UBERON:0000158!5.98e-11!14;UBERON:0003124!1.90e-10!7;UBERON:0000478!2.66e-10!24;UBERON:0005409!4.49e-10!35;UBERON:0001007!1.97e-09!155;UBERON:0001555!1.97e-09!155;UBERON:0007026!1.97e-09!155;UBERON:0004921!2.10e-09!129;UBERON:0004185!2.10e-09!129;UBERON:0001987!7.68e-09!4;UBERON:0004340!7.68e-09!4;UBERON:0000077!1.85e-08!130;UBERON:0004923!6.69e-08!57;UBERON:0000160!6.93e-08!27;UBERON:0004907!4.67e-07!5;UBERON:0001781!5.85e-07!3;UBERON:0001782!5.85e-07!3;UBERON:0005424!5.85e-07!3;UBERON:0001046!9.69e-07!19 | |ontology_enrichment_uberon=UBERON:0004119!3.89e-12!169;UBERON:0000925!3.89e-12!169;UBERON:0006595!3.89e-12!169;UBERON:0005631!5.98e-11!14;UBERON:0000158!5.98e-11!14;UBERON:0003124!1.90e-10!7;UBERON:0000478!2.66e-10!24;UBERON:0005409!4.49e-10!35;UBERON:0001007!1.97e-09!155;UBERON:0001555!1.97e-09!155;UBERON:0007026!1.97e-09!155;UBERON:0004921!2.10e-09!129;UBERON:0004185!2.10e-09!129;UBERON:0001987!7.68e-09!4;UBERON:0004340!7.68e-09!4;UBERON:0000077!1.85e-08!130;UBERON:0004923!6.69e-08!57;UBERON:0000160!6.93e-08!27;UBERON:0004907!4.67e-07!5;UBERON:0001781!5.85e-07!3;UBERON:0001782!5.85e-07!3;UBERON:0005424!5.85e-07!3;UBERON:0001046!9.69e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;5.97e-18;24!UBERON:0000160;2.35e-15;17!UBERON:0005409;2.99e-15;22!UBERON:0001052;1.10e-13;4!UBERON:0001987;4.41e-13;4!UBERON:0004921;1.77e-11;33!UBERON:0004907;4.75e-11;5!UBERON:0005631;1.47e-09;10!UBERON:0000158;1.47e-09;10!UBERON:0000059;9.37e-09;11!UBERON:0000922;1.05e-08;49!UBERON:0001781;2.59e-08;3!UBERON:0001782;2.59e-08;3!UBERON:0000020;2.90e-08;23!UBERON:0000305;3.43e-08;7!UBERON:0001032;6.76e-08;24!UBERON:0004456;6.76e-08;24!UBERON:0007029;3.10e-07;1!UBERON:0000970;7.21e-07;20 | |ontology_enrichment_uberon_v019=UBERON:0000478;5.97e-18;24!UBERON:0000160;2.35e-15;17!UBERON:0005409;2.99e-15;22!UBERON:0001052;1.10e-13;4!UBERON:0001987;4.41e-13;4!UBERON:0004921;1.77e-11;33!UBERON:0004907;4.75e-11;5!UBERON:0005631;1.47e-09;10!UBERON:0000158;1.47e-09;10!UBERON:0000059;9.37e-09;11!UBERON:0000922;1.05e-08;49!UBERON:0001781;2.59e-08;3!UBERON:0001782;2.59e-08;3!UBERON:0000020;2.90e-08;23!UBERON:0000305;3.43e-08;7!UBERON:0001032;6.76e-08;24!UBERON:0004456;6.76e-08;24!UBERON:0007029;3.10e-07;1!UBERON:0000970;7.21e-07;20 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.15e-19,14;UBERON:0000158,3.15e-19,14;UBERON:0000478,5.39e-18,24;UBERON:0000160,2.43e-15,17;UBERON:0001052,1.17e-13,4;UBERON:0005409,2.33e-13,25;UBERON:0001987,3.72e-13,4;UBERON:0004340,3.72e-13,4;UBERON:0003124,5.45e-13,7;UBERON:0004907,5.01e-11,5;UBERON:0000059,9.66e-09,11;UBERON:0004923,2.49e-08,66;UBERON:0001782,2.96e-08,3;UBERON:0005424,2.96e-08,3;UBERON:0000305,3.39e-08,7;UBERON:0004921,6.23e-08,118;UBERON:0000020,7.26e-08,24;UBERON:0001032,7.26e-08,24;UBERON:0004456,7.26e-08,24;UBERON:0004119,7.54e-08,160;UBERON:0000925,7.54e-08,160;UBERON:0006595,7.54e-08,160;UBERON:0004871,3.19e-07,8;UBERON:0007029,3.20e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,6.19301990097322,5.19098219898201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0689594688802,0,0.219500570817251,0,0.100528972411631,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.5967024754802,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0,0,0,1.81876542867756,1.66435439510497,5.14063498660456,0,0,0,0,0,0,0,0,0,0,0,0,5.438675231623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05160100093111,1.31205858279882,0.650756789328606,0,0,0,0,0,0,0.096670718292122,0,0,0.275673144969061,0,0.290033387828457,0.340906509664404,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,8.35605696581915,12.1755519141382,14.1293922965647,0,0,0,0,0,0.398495976502139,0.276283915531148,0.503865495708552,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0.54323685961004,2.55200927785536,0,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0,0,1.27217764290547,0,0,0.265372693510018,67.2133159426988,0,0,0,0,0,0,0,0,0,0,18.1486074072996,0,0,0,0,0,0,0,0,0,0,1.38847790668105,0.783939179315021,0,0,0,0,0,0,0.678923115418936,0,2.25980740780532,0,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,21.9017246814082,24.3950940808253,26.8266104539656,0,0,0,0,0,0,0,0,2.32140586367385,0,0,0,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733714394086716,0,0,0,0.198916222116275,0.451261970095544,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0.175871244359621,0.127762427639595,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0.235479278551542,0,6.72653191953094,81.2711261253451,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.196300467230486,0.365753774946808,0,0,1.1598144313382,8.25708688200537,0,0,0,0,0,0,0.926089897295336,93.7620514561977,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,2.92134555298607,0,0.143339583151451,0.315543124386369,0,0,15.3417783749466,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.639701945702943,3.80903090341985,0,0.124149428591716,0.112131862580613,0,0,0.435433495793923,1.36893320434112,0.134704106029175,0.286888821570705,2.66128285236811,0,0,0,0,16.4248659682418,0,0.406896178315738,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,6.19301990097322,5.19098219898201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0689594688802,0,0.219500570817251,0,0.100528972411631,0.462942225792648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.5967024754802,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0,0,0,1.81876542867756,1.66435439510497,5.14063498660456,0,0,0,0,0,0,0,0,0,0,0,0,5.438675231623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05160100093111,1.31205858279882,0.650756789328606,0,0,0,0,0,0,0.096670718292122,0,0,0.275673144969061,0,0.290033387828457,0.340906509664404,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,8.35605696581915,12.1755519141382,14.1293922965647,0,0,0,0,0,0.398495976502139,0.276283915531148,0.503865495708552,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0.54323685961004,2.55200927785536,0,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0,0,1.27217764290547,0,0,0.265372693510018,67.2133159426988,0,0,0,0,0,0,0,0,0,0,18.1486074072996,0,0,0,0,0,0,0,0,0,0,1.38847790668105,0.783939179315021,0,0,0,0,0,0,0.678923115418936,0,2.25980740780532,0,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,21.9017246814082,24.3950940808253,26.8266104539656,0,0,0,0,0,0,0,0,2.32140586367385,0,0,0,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0.255788742607303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733714394086716,0,0,0,0.198916222116275,0.451261970095544,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0.496211178389294,0.175871244359621,0.127762427639595,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0.235479278551542,0,6.72653191953094,81.2711261253451,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.196300467230486,0.365753774946808,0,0,1.1598144313382,8.25708688200537,0,0,0,0,0,0,0.926089897295336,93.7620514561977,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,2.92134555298607,0,0.143339583151451,0.315543124386369,0,0,15.3417783749466,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0.639701945702943,3.80903090341985,0,0.124149428591716,0.112131862580613,0,0,0.435433495793923,1.36893320434112,0.134704106029175,0.286888821570705,2.66128285236811,0,0,0,0,16.4248659682418,0,0.406896178315738,0.665756774185513,0,0 | ||
|short_description=p1@CYP2W1 | |short_description=p1@CYP2W1 | ||
}} | }} |
Latest revision as of 19:05, 24 September 2015
Short description: | p1@CYP2W1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CYP2W1_5end |
Coexpression cluster: | C2364_small_rectum_colon_hepatocellular_duodenum_temporal_umbilical |
Association with transcript: | -10bp_to_ENST00000308919, NM_017781, uc003sjq.1, uc003sjr.1_5end |
EntrezGene: | CYP2W1 |
HGNC: | 20243 |
UniProt: | Q8TAV3A6NJ10 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.49e-18 | 19 |
placental epithelial cell | 2.38e-17 | 3 |
corneal epithelial cell | 1.44e-12 | 2 |
amnion mesenchymal stem cell | 2.69e-11 | 5 |
retinal pigment epithelial cell | 2.96e-08 | 3 |
epithelial cell of esophagus | 5.14e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.15e-19 | 14 |
membranous layer | 3.15e-19 | 14 |
extraembryonic structure | 5.39e-18 | 24 |
intestine | 2.43e-15 | 17 |
rectum | 1.17e-13 | 4 |
gastrointestinal system | 2.33e-13 | 25 |
placenta | 3.72e-13 | 4 |
allantois | 3.72e-13 | 4 |
chorion | 5.45e-13 | 7 |
lower digestive tract | 5.01e-11 | 5 |
large intestine | 9.66e-09 | 11 |
organ component layer | 2.49e-08 | 66 |
pigmented layer of retina | 2.96e-08 | 3 |
presumptive retinal pigmented epithelium | 2.96e-08 | 3 |
amnion | 3.39e-08 | 7 |
subdivision of digestive tract | 6.23e-08 | 118 |
sense organ | 7.26e-08 | 24 |
sensory system | 7.26e-08 | 24 |
entire sense organ system | 7.26e-08 | 24 |
endoderm-derived structure | 7.54e-08 | 160 |
endoderm | 7.54e-08 | 160 |
presumptive endoderm | 7.54e-08 | 160 |
somatic layer of lateral plate mesoderm | 3.19e-07 | 8 |
surface | 3.20e-07 | 1 |