FFCP PHASE1:Hg19::chr9:123165438..123165450,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=55755 | |EntrezGene=55755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=18672 | |HGNC=18672 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=489bp_to_ENST00000484546_5end | |association_with_transcript=489bp_to_ENST00000484546_5end | ||
|cluster_id=chr9:123165438..123165450,- | |||
|description=CAGE_peak_9_at_CDK5RAP2_5end | |description=CAGE_peak_9_at_CDK5RAP2_5end | ||
|id=chr9:123165438..123165450,- | |id=chr9:123165438..123165450,- | ||
Latest revision as of 19:10, 24 September 2015
| Short description: | p9@CDK5RAP2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_9_at_CDK5RAP2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 489bp_to_ENST00000484546_5end |
| EntrezGene: | CDK5RAP2 |
| HGNC: | 18672 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p9@CDK5RAP2 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| nucleus pulposus cell of intervertebral disc | 3.12e-12 | 3 |
| skeletal muscle satellite cell | 1.38e-10 | 3 |
| mesenchymal stem cell of the bone marrow | 2.23e-10 | 6 |
| cell of skeletal muscle | 1.82e-09 | 9 |
| connective tissue cell | 8.78e-09 | 361 |
| annulus pulposus cell | 9.24e-09 | 2 |
| central nervous system pericyte | 5.67e-08 | 2 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| intervertebral cartilage | 2.87e-19 | 5 |
| symphysis | 2.87e-19 | 5 |
| nonsynovial joint | 2.87e-19 | 5 |
| fibrous joint | 2.87e-19 | 5 |
| cartilaginous joint | 2.87e-19 | 5 |
| developing mesenchymal condensation | 2.87e-19 | 5 |
| pre-cartilage condensation | 2.87e-19 | 5 |
| cartilaginous condensation | 2.87e-19 | 5 |
| cartilage element | 2.87e-19 | 5 |
| post-cranial axial skeletal system | 2.87e-19 | 5 |
Showing 1 to 10 of 29 entries
