FFCP PHASE1:Hg19::chr19:10124147..10124176,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50700 | |EntrezGene=50700 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14423 | |HGNC=14423 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NYR8 | |UniProt=Q9NYR8 | ||
|association_with_transcript=222bp_to_ENST00000171214,NM_015725,uc002mmr.2_5end | |association_with_transcript=222bp_to_ENST00000171214,NM_015725,uc002mmr.2_5end | ||
|cluster_id=chr19:10124147..10124176,+ | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_1_at_RDH8_5end | |description=CAGE_peak_1_at_RDH8_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!1.68e-37!5;CL:0000148!4.72e-29!10;CL:0000541!4.72e-29!10;CL:0000147!8.98e-21!14;CL:0000325!3.46e-18!39;CL:0000710!1.52e-14!20;CL:0002566!1.09e-12!1;CL:0000075!9.24e-11!27;CL:0000333!1.85e-09!41;CL:0002077!8.67e-09!33;CL:0000136!1.72e-07!15;CL:0002617!5.28e-07!2 | |ontology_enrichment_celltype=CL:0002322!1.68e-37!5;CL:0000148!4.72e-29!10;CL:0000541!4.72e-29!10;CL:0000147!8.98e-21!14;CL:0000325!3.46e-18!39;CL:0000710!1.52e-14!20;CL:0002566!1.09e-12!1;CL:0000075!9.24e-11!27;CL:0000333!1.85e-09!41;CL:0002077!8.67e-09!33;CL:0000136!1.72e-07!15;CL:0002617!5.28e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000149;1.40e-07;4 | |ontology_enrichment_celltype_v019=CL:0000149;1.40e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000149,1.40e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;7.08e-34;3 | |ontology_enrichment_development_v019=UBERON:0003056;7.08e-34;3 | ||
|ontology_enrichment_disease=DOID:2355!6.82e-13!1;DOID:1909!3.09e-07!2;DOID:74!4.42e-07!2 | |ontology_enrichment_disease=DOID:2355!6.82e-13!1;DOID:1909!3.09e-07!2;DOID:74!4.42e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.46e-13;2 | |ontology_enrichment_disease_v019=DOID:1909;1.46e-13;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,1.37e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0001905!7.09e-25!2;UBERON:0002757!7.09e-25!2;UBERON:0010134!7.09e-25!2;UBERON:0002784!7.09e-25!2;UBERON:0005408!7.09e-25!2;UBERON:0001899!7.09e-25!2;UBERON:0003296!6.07e-13!4;UBERON:0010133!6.07e-13!4;UBERON:0000966!1.54e-10!5;UBERON:0005388!1.54e-10!5;UBERON:0001802!1.54e-10!5;UBERON:0001894!8.94e-08!7;UBERON:0006222!8.94e-08!7 | |ontology_enrichment_uberon=UBERON:0001905!7.09e-25!2;UBERON:0002757!7.09e-25!2;UBERON:0010134!7.09e-25!2;UBERON:0002784!7.09e-25!2;UBERON:0005408!7.09e-25!2;UBERON:0001899!7.09e-25!2;UBERON:0003296!6.07e-13!4;UBERON:0010133!6.07e-13!4;UBERON:0000966!1.54e-10!5;UBERON:0005388!1.54e-10!5;UBERON:0001802!1.54e-10!5;UBERON:0001894!8.94e-08!7;UBERON:0006222!8.94e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.54e-50;2!UBERON:0002757;4.54e-50;2!UBERON:0010134;4.54e-50;2!UBERON:0005408;4.54e-50;2!UBERON:0001899;4.54e-50;2!UBERON:0003296;1.19e-25;4!UBERON:0010133;1.19e-25;4!UBERON:0002784;1.19e-25;4!UBERON:0000966;8.54e-21;5!UBERON:0005388;8.54e-21;5!UBERON:0001802;8.54e-21;5!UBERON:0001894;3.93e-15;7!UBERON:0000970;6.50e-12;20!UBERON:0002104;2.22e-11;21!UBERON:0000020;1.89e-10;23!UBERON:0001032;4.85e-10;24!UBERON:0004456;4.85e-10;24 | |ontology_enrichment_uberon_v019=UBERON:0001905;4.54e-50;2!UBERON:0002757;4.54e-50;2!UBERON:0010134;4.54e-50;2!UBERON:0005408;4.54e-50;2!UBERON:0001899;4.54e-50;2!UBERON:0003296;1.19e-25;4!UBERON:0010133;1.19e-25;4!UBERON:0002784;1.19e-25;4!UBERON:0000966;8.54e-21;5!UBERON:0005388;8.54e-21;5!UBERON:0001802;8.54e-21;5!UBERON:0001894;3.93e-15;7!UBERON:0000970;6.50e-12;20!UBERON:0002104;2.22e-11;21!UBERON:0000020;1.89e-10;23!UBERON:0001032;4.85e-10;24!UBERON:0004456;4.85e-10;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,4.00e-50,2;UBERON:0002757,4.00e-50,2;UBERON:0010134,4.00e-50,2;UBERON:0005408,4.00e-50,2;UBERON:0001899,4.00e-50,2;UBERON:0003296,1.11e-25,4;UBERON:0010133,1.11e-25,4;UBERON:0002784,1.11e-25,4;UBERON:0000966,1.71e-17,6;UBERON:0005388,1.71e-17,6;UBERON:0001802,1.71e-17,6;UBERON:0001894,3.79e-15,7;UBERON:0006222,3.79e-15,7;UBERON:0000970,2.26e-11,21;UBERON:0002104,2.26e-11,21;UBERON:0000020,4.92e-10,24;UBERON:0001032,4.92e-10,24;UBERON:0004456,4.92e-10,24;UBERON:0003056,8.13e-07,61 | |||
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|short_description=p1@RDH8 | |short_description=p1@RDH8 | ||
}} | }} |
Latest revision as of 23:02, 24 September 2015
Short description: | p1@RDH8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RDH8_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 222bp_to_ENST00000171214, NM_015725, uc002mmr.2_5end |
EntrezGene: | RDH8 |
HGNC: | 14423 |
UniProt: | Q9NYR8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
visual pigment cell | 1.40e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
pineal body | 4.00e-50 | 2 |
regional part of epithalamus | 4.00e-50 | 2 |
secretory circumventricular organ | 4.00e-50 | 2 |
circumventricular organ | 4.00e-50 | 2 |
epithalamus | 4.00e-50 | 2 |
gland of diencephalon | 1.11e-25 | 4 |
neuroendocrine gland | 1.11e-25 | 4 |
regional part of diencephalon | 1.11e-25 | 4 |
retina | 1.71e-17 | 6 |
photoreceptor array | 1.71e-17 | 6 |
posterior segment of eyeball | 1.71e-17 | 6 |
diencephalon | 3.79e-15 | 7 |
future diencephalon | 3.79e-15 | 7 |
eye | 2.26e-11 | 21 |
visual system | 2.26e-11 | 21 |
sense organ | 4.92e-10 | 24 |
sensory system | 4.92e-10 | 24 |
entire sense organ system | 4.92e-10 | 24 |
pre-chordal neural plate | 8.13e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.37e-13 | 2 |