FFCP PHASE1:Hg19::chr17:42988599..42988605,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2670 | |EntrezGene=2670 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4235 | |HGNC=4235 | ||
|TSSclassifier=strong | |||
|UniProt=P14136 | |UniProt=P14136 | ||
|association_with_transcript=72bp_to_M26638_5end | |association_with_transcript=72bp_to_M26638_5end | ||
|cluster_id=chr17:42988599..42988605,- | |||
|coexpression_cluster_id=C545 | |coexpression_cluster_id=C545 | ||
|description=CAGE_peak_46_at_GFAP_5end | |description=CAGE_peak_46_at_GFAP_5end | ||
|id=chr17:42988599..42988605,- | |id=chr17:42988599..42988605,- | ||
|ontology_enrichment_celltype=CL:0000128!1.39e-30!7;CL:0000126!1.39e-30!7;CL:0000127!1.39e-30!7;CL:0002453!1.39e-30!7;CL:0002319!3.61e-30!25;CL:0002605!8.77e-27!3;CL:0000047!1.04e-26!8;CL:0000540!1.95e-13!6;CL:0000031!1.95e-13!6;CL:0000404!1.95e-13!6;CL:0000243!1.56e-12!15;CL:0000125!1.56e-12!15;CL:0000030!1.56e-12!15;CL:0000339!1.56e-12!15;CL:0000133!1.76e-12!59;CL:0002603!3.19e-12!3;CL:0000095!3.39e-11!17;CL:0000123!3.39e-11!17;CL:0000221!3.62e-10!71 | |ontology_enrichment_celltype=CL:0000128!1.39e-30!7;CL:0000126!1.39e-30!7;CL:0000127!1.39e-30!7;CL:0002453!1.39e-30!7;CL:0002319!3.61e-30!25;CL:0002605!8.77e-27!3;CL:0000047!1.04e-26!8;CL:0000540!1.95e-13!6;CL:0000031!1.95e-13!6;CL:0000404!1.95e-13!6;CL:0000243!1.56e-12!15;CL:0000125!1.56e-12!15;CL:0000030!1.56e-12!15;CL:0000339!1.56e-12!15;CL:0000133!1.76e-12!59;CL:0002603!3.19e-12!3;CL:0000095!3.39e-11!17;CL:0000123!3.39e-11!17;CL:0000221!3.62e-10!71 | ||
|ontology_enrichment_celltype_v019=CL:0002605;6.88e-75;3!CL:0000047;4.00e-50;2!CL:0002319;9.24e-45;25!CL:0000128;1.15e-32;7!CL:0000126;1.15e-32;7!CL:0000127;1.15e-32;7!CL:0000540;2.19e-17;6!CL:0000404;2.19e-17;6!CL:0000243;6.28e-14;15!CL:0000125;6.28e-14;15!CL:0000095;1.54e-12;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,6.07e-75,3;CL:0000047,1.93e-49,8;CL:0002319,8.95e-45,25;CL:0000128,1.09e-32,7;CL:0000126,1.09e-32,7;CL:0000127,1.09e-32,7;CL:0002453,1.09e-32,7;CL:0000133,6.10e-20,59;CL:0000540,2.19e-17,6;CL:0000031,2.19e-17,6;CL:0000404,2.19e-17,6;CL:0000221,1.86e-16,72;CL:0000243,6.14e-14,15;CL:0000125,6.14e-14,15;CL:0000030,6.14e-14,15;CL:0000339,6.14e-14,15;CL:0000095,1.51e-12,17;CL:0000123,1.51e-12,17 | |||
|ontology_enrichment_development_v019=CL:0000133;2.17e-17;59!CL:0000031;2.19e-17;6!CL:0000339;6.28e-14;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000956;2.41e-09;25!UBERON:0000203;2.41e-09;25!UBERON:0002791;8.75e-08;32!UBERON:0001869;8.75e-08;32!UBERON:0003528;2.17e-07;34!UBERON:0002020;2.17e-07;34!UBERON:0001893;2.17e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.11e-14,81;UBERON:0001016,3.00e-13,89;UBERON:0000956,2.38e-09,25;UBERON:0000203,2.38e-09,25;UBERON:0002791,1.70e-07,32;UBERON:0001869,1.70e-07,32;UBERON:0003528,4.21e-07,34;UBERON:0002020,4.21e-07,34;UBERON:0001893,4.21e-07,34;UBERON:0004121,5.65e-07,171;UBERON:0000924,5.65e-07,171;UBERON:0006601,5.65e-07,171 | |||
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|short_description=p46@GFAP | |short_description=p46@GFAP | ||
}} | }} |
Latest revision as of 23:34, 24 September 2015
Short description: | p46@GFAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_46_at_GFAP_5end |
Coexpression cluster: | C545_Astrocyte_Neural_Neurons_parietal_neuroectodermal_occipital_temporal |
Association with transcript: | 72bp_to_M26638_5end |
EntrezGene: | GFAP |
HGNC: | 4235 |
UniProt: | P14136 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 6.07e-75 | 3 |
neuronal stem cell | 1.93e-49 | 8 |
neural cell | 8.95e-45 | 25 |
oligodendrocyte | 1.09e-32 | 7 |
macroglial cell | 1.09e-32 | 7 |
astrocyte | 1.09e-32 | 7 |
oligodendrocyte precursor cell | 1.09e-32 | 7 |
neurectodermal cell | 6.10e-20 | 59 |
neuron | 2.19e-17 | 6 |
neuroblast | 2.19e-17 | 6 |
electrically signaling cell | 2.19e-17 | 6 |
ectodermal cell | 1.86e-16 | 72 |
glial cell (sensu Vertebrata) | 6.14e-14 | 15 |
glial cell | 6.14e-14 | 15 |
glioblast | 6.14e-14 | 15 |
glioblast (sensu Vertebrata) | 6.14e-14 | 15 |
neuron associated cell | 1.51e-12 | 17 |
neuron associated cell (sensu Vertebrata) | 1.51e-12 | 17 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.11e-14 | 81 |
nervous system | 3.00e-13 | 89 |
cerebral cortex | 2.38e-09 | 25 |
pallium | 2.38e-09 | 25 |
regional part of telencephalon | 1.70e-07 | 32 |
cerebral hemisphere | 1.70e-07 | 32 |
brain grey matter | 4.21e-07 | 34 |
gray matter | 4.21e-07 | 34 |
telencephalon | 4.21e-07 | 34 |
ectoderm-derived structure | 5.65e-07 | 171 |
ectoderm | 5.65e-07 | 171 |
presumptive ectoderm | 5.65e-07 | 171 |