FFCP PHASE1:Hg19::chr1:21766691..21766715,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84224 | |EntrezGene=84224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25076 | |HGNC=25076 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-15bp_to_ENST00000486229_5end | |association_with_transcript=-15bp_to_ENST00000486229_5end | ||
|cluster_id=chr1:21766691..21766715,+ | |||
|coexpression_cluster_id=C90 | |coexpression_cluster_id=C90 | ||
|description=CAGE_peak_3_at_NBPF3_5end | |description=CAGE_peak_3_at_NBPF3_5end | ||
|id=chr1:21766691..21766715,+ | |id=chr1:21766691..21766715,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002622;2.56e-16;3!CL:0002504;5.39e-16;3!CL:1000279;5.39e-16;3!CL:1000280;5.39e-16;3!CL:1000487;8.59e-12;2!CL:0002569;3.79e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,2.26e-16,3;CL:0002504,4.41e-16,3;CL:1000279,4.41e-16,3;CL:1000280,4.41e-16,3;CL:1000487,8.61e-12,2;CL:0002569,4.51e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;3.91e-13;10!DOID:3095;1.20e-10;22!DOID:2994;1.20e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.29e-13,10;DOID:3095,1.03e-10,22;DOID:2994,1.03e-10,22 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;1.72e-12;4!UBERON:0000923;1.72e-12;4!UBERON:0010316;1.72e-12;4!UBERON:0005291;1.72e-12;4!UBERON:0002367;7.69e-12;11!UBERON:0010147;7.69e-12;11!UBERON:0003937;7.89e-11;12!UBERON:0005399;7.89e-11;12!UBERON:0003101;1.08e-10;22!UBERON:0000079;1.08e-10;22!UBERON:0002050;4.40e-10;5!UBERON:0005423;4.40e-10;5!UBERON:0003422;3.79e-08;6!UBERON:0003104;4.83e-07;7!UBERON:0009142;4.83e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002367,7.29e-12,11;UBERON:0010147,7.29e-12,11;UBERON:0009846,7.29e-12,11;UBERON:0003353,7.29e-12,11;UBERON:0004902,7.29e-12,11;UBERON:0003820,7.29e-12,11;UBERON:0009847,7.29e-12,11;UBERON:0003937,7.50e-11,12;UBERON:0005399,7.50e-11,12;UBERON:0003101,1.22e-10,22;UBERON:0000079,1.22e-10,22;UBERON:0000162,2.94e-09,14;UBERON:0001353,2.94e-09,14;UBERON:0000163,2.94e-09,14;UBERON:0006866,2.94e-09,14;UBERON:0000164,2.94e-09,14;UBERON:0000931,2.94e-09,14;UBERON:0004122,1.28e-08,15;UBERON:0003422,4.51e-08,6;UBERON:0001046,9.74e-07,19 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0,0.662794751455832,0,0,0,0,0.246242116153576,0,0,0,0,0,0,0,0,0,1.15148819429164,0,0,0,0,0.0774672005803016,0.284338464974843,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0.560508562981536,0.263384084775077,0.196709770113833,1.17903228824749,0.616804496998528,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0.821127996921047,1.41124720257313,1.06976078313403,0.144824403882799,0,0,0.383587685530591,0,0.50133791063589,0,0,0,0,0,0.175669571386252,0.130979075497713,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0,0.103325781175765,1.18800285728205,0.494533858557114,0.910161361938026,2.87447256726495,0,0.375355559615893,0,0.438977620880838,0.30648779579902,0.150238058906597,0,0,0.640672166455702,0.635795703478686,0.300091096084402,0.206105058476878,0,0,0.168776332241266,0,0.252433774244115,0.460249493211497,0,0,0,0,0.193260853163297,0,0.286804595389004,0.121973706129595,0,0.580969714347592,0.207322110030741,0.504641701751257,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0.237270619111097,0,0.196221465125346,0,0,0,0.8231480226628,0,0,0,0,0,0.245976877086227,0,0,0,0.201057944823262,0,0,0,0,0,0.117408694235822,0,0,0,0,0.858486162094873,0,0,0,0,0,0.141775097242386,0.179117045405697,0.581267877027924,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0.258543431515556,3.57656445851882,0,0.26593811658487,0,0,0,0,0,2.17048642156577,0.823240336780769,0,1.06617584622764,2.37585561880029,0,0,0,0,0,0,0,1.14861935834114,0,0,0.205476322550383,0,0.112085143993527,0.788123040807709,0.862510299438069,0.513372145118994,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.892144943985809,0.630809660135739,0,0,0,0,0,0,0.60818530127658,0,0,0,0,0.426910231213777,0,0,0,0,0,0,0.128139149255701,0.511707249066704,0.321707842287215,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,2.41110341145674,2.54927635209404,3.01586154406675,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.412164046590889,0,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0,0,0.178064071293475,0,0.192190067365106,0.382838137483752,0,0,0,0,0,0,0,0,0.143124886741991,0,0,1.14378116354295,0.255897791311334,0,0,0.78494864019923,2.33834194858309,3.56898138656871,1.29593642580255,0,0,0,2.43816869544795,0,0,3.27599787379166,5.79762271010222,0,0,0,0,0,0.655894752046633,0,0,0,0.430234056612155,1.17898849215745,0,0,0,0,0,0.349934720244983,0,0,0,0.282431402330337,0,1.68471475667626,0,0.229723400206959,0,0.764637207142375,0.569647187174163,0.238231775457789,0,0.648473311192717,0,0,0.213648142254946,0,0,0,0,0.284567373393656,0,0.199579371432817,0,0,0,0.280797178113459,0,0,0,0.169291777801603,0,0,0,0.687010689511529,0,0,0.166849141711909,0,0,0,0,0,0,0.37428108081644,0.146508179271894,0,0.111443384277478,0,0.71623345421307,0,0.307160702099232,0,0,0.111308705022906,0,0.63337622438398,0,0,0,0.306806047506464,0,0.311039587661807,0.0898683511473268,0,0,0,0,0,0,0,0,0.260427761085233,0.437299999980979,0,0.1137934482855,0,0,0.344743373241465,2.33283690706603,0,0,0,3.05163472634166,0.552896299656123,0.295547618953547,0,0,0,0.0769502585037971,0.455768223388005,0,0.987334088507493,0,0.31900115973192,0.549585560411174,0.533034776018635,0,0,0.332423363800313,0,0,0.167821586975843,0,0.158936578980379,0.210998064528027,0.326465616318295,0.141353071433941,0.432777279484182,0.995261931078505,0.0884575645033392,0,0,0,0.104421949505455,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0.61214552326098,0.126373159256976,1.50323419414493,0.207376382794494,0,0,0.313932918407225,0,0,0,0.173559738335131,0.293977192243133,0.174118413160805,0,0.171986032471617,0,0,0,0,0,0,0.137041924646751,0,0.189932387867636,0.391102765469606,0.0801588202515337,0,0.39961921916426,0.288180834308212,0.229073192331831,0,0.14405479798815,0,0,0,0.104602846312333,0.203996435272644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.164831716762333,0.13480708770837,0,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0.121499113316049,0.335434687599266,0.0788057072991982,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,1.19730191562487,0.164185041498678,0,0.453248366080503,0,0,0.129282956361551,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0.612691153526923,0,0.314108192500469,0,0,0,0,0.110929051536852,0.0620964029413835,0.138348634936231,0,0,0,0,0.468334905806882,0.28984205722165,0,0.233713309847224,0,0.189403005275089,0,0,0,0,0.15543720058278,0,0,0,0,0.414706207840855,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0.680117776536817,0.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| ||
|short_description=p3@NBPF3 | |short_description=p3@NBPF3 | ||
}} | }} |
Latest revision as of 04:13, 25 September 2015
Short description: | p3@NBPF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NBPF3_5end |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | -15bp_to_ENST00000486229_5end |
EntrezGene: | NBPF3 |
HGNC: | 25076 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 2.26e-16 | 3 |
enteric smooth muscle cell | 4.41e-16 | 3 |
smooth muscle cell of large intestine | 4.41e-16 | 3 |
smooth muscle cell of colon | 4.41e-16 | 3 |
smooth muscle cell of prostate | 8.61e-12 | 2 |
mesenchymal stem cell of umbilical cord | 4.51e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
prostate gland | 7.29e-12 | 11 |
male accessory sex gland | 7.29e-12 | 11 |
embryonic cloacal epithelium | 7.29e-12 | 11 |
epithelium of hindgut | 7.29e-12 | 11 |
urogenital sinus epithelium | 7.29e-12 | 11 |
prostate bud | 7.29e-12 | 11 |
prostate field | 7.29e-12 | 11 |
sex gland | 7.50e-11 | 12 |
male reproductive gland | 7.50e-11 | 12 |
male organism | 1.22e-10 | 22 |
male reproductive system | 1.22e-10 | 22 |
cloaca | 2.94e-09 | 14 |
anal region | 2.94e-09 | 14 |
embryonic cloaca | 2.94e-09 | 14 |
terminal part of digestive tract | 2.94e-09 | 14 |
primitive urogenital sinus | 2.94e-09 | 14 |
proctodeum | 2.94e-09 | 14 |
genitourinary system | 1.28e-08 | 15 |
mesenchyme of umbilical cord | 4.51e-08 | 6 |
hindgut | 9.74e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.29e-13 | 10 |
germ cell and embryonal cancer | 1.03e-10 | 22 |
germ cell cancer | 1.03e-10 | 22 |