FFCP PHASE1:Hg19::chr3:142315225..142315290,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5357 | |EntrezGene=5357 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9090 | |HGNC=9090 | ||
|TSSclassifier=strong | |||
|UniProt=Q14651,C9JVY2,C9J359,C9JAM8,C9JYI1,C9JU08 | |UniProt=Q14651,C9JVY2,C9J359,C9JAM8,C9JYI1,C9JU08 | ||
|association_with_transcript=0bp_to_ENST00000457734,ENST00000461644,ENST00000475296,ENST00000476044,ENST00000483373,ENST00000495744,NM_001145319,uc010huv.2_5end | |association_with_transcript=0bp_to_ENST00000457734,ENST00000461644,ENST00000475296,ENST00000476044,ENST00000483373,ENST00000495744,NM_001145319,uc010huv.2_5end | ||
|cluster_id=chr3:142315225..142315290,+ | |||
|description=CAGE_peak_1_at_PLS1_5end | |description=CAGE_peak_1_at_PLS1_5end | ||
|id=chr3:142315225..142315290,+ | |id=chr3:142315225..142315290,+ | ||
Latest revision as of 04:50, 25 September 2015
| Short description: | p1@PLS1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_PLS1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000457734, ENST00000461644, ENST00000475296, ENST00000476044, ENST00000483373, ENST00000495744, NM_001145319, uc010huv.2_5end |
| EntrezGene: | PLS1 |
| HGNC: | 9090 |
| UniProt: | Q14651C9JVY2C9J359C9JAM8C9JYI1C9JU08 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@PLS1 |
|---|
0
50
100
150
200
250
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 2.45e-25 | 253 |
| endodermal cell | 8.04e-12 | 58 |
| endo-epithelial cell | 1.67e-09 | 42 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| organ system subdivision | 1.15e-19 | 223 |
| digestive system | 2.26e-15 | 145 |
| digestive tract | 2.26e-15 | 145 |
| primitive gut | 2.26e-15 | 145 |
| subdivision of digestive tract | 3.66e-14 | 118 |
| endoderm-derived structure | 4.30e-14 | 160 |
| endoderm | 4.30e-14 | 160 |
| presumptive endoderm | 4.30e-14 | 160 |
| foregut | 9.68e-11 | 87 |
| endo-epithelium | 1.96e-10 | 82 |
Showing 1 to 10 of 28 entries
| Ontology term | p-value | n |
|---|---|---|
| cancer | 4.39e-37 | 235 |
| carcinoma | 1.18e-36 | 106 |
| disease of cellular proliferation | 1.43e-35 | 239 |
| cell type cancer | 1.34e-33 | 143 |
| organ system cancer | 9.45e-17 | 137 |
| adenocarcinoma | 4.56e-12 | 25 |
| gastrointestinal system cancer | 3.98e-07 | 14 |
Showing 1 to 7 of 7 entries
