FFCP PHASE1:Hg19::chr17:46675344..46675355,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3216 | |EntrezGene=3216 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5117 | |HGNC=5117 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=156bp_to_AB464576,CU677079,DQ890732,HQ447184_5end | |association_with_transcript=156bp_to_AB464576,CU677079,DQ890732,HQ447184_5end | ||
|cluster_id=chr17:46675344..46675355,- | |||
|description=CAGE_peak_9_at_HOXB6_5end | |description=CAGE_peak_9_at_HOXB6_5end | ||
|id=chr17:46675344..46675355,- | |id=chr17:46675344..46675355,- | ||
|ontology_enrichment_celltype=CL:1000449!2.38e-10!16;CL:1000497!4.35e-10!18;CL:0002518!4.35e-10!18;CL:0002681!1.12e-08!13;CL:0002584!1.12e-08!13;CL:1000507!3.03e-07!12;CL:1000494!3.03e-07!12 | |ontology_enrichment_celltype=CL:1000449!2.38e-10!16;CL:1000497!4.35e-10!18;CL:0002518!4.35e-10!18;CL:0002681!1.12e-08!13;CL:0002584!1.12e-08!13;CL:1000507!3.03e-07!12;CL:1000494!3.03e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002615;2.64e-13;3!CL:0002598;4.15e-10;2!CL:1000449;1.04e-09;15!CL:0002681;8.69e-09;12!CL:0002584;8.69e-09;12!CL:0002188;1.34e-08;5!CL:1000497;1.72e-08;17!CL:0002518;1.72e-08;17 | |ontology_enrichment_celltype_v019=CL:0002615;2.64e-13;3!CL:0002598;4.15e-10;2!CL:1000449;1.04e-09;15!CL:0002681;8.69e-09;12!CL:0002584;8.69e-09;12!CL:0002188;1.34e-08;5!CL:1000497;1.72e-08;17!CL:0002518;1.72e-08;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0002615,3.80e-13,3;CL:0002598,3.91e-10,2;CL:1000449,6.26e-10,15;CL:0002681,5.87e-09,12;CL:0002584,5.87e-09,12;CL:0002188,9.73e-09,5;CL:1000497,1.11e-08,17;CL:0002518,1.11e-08,17 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000353;7.44e-10;15!UBERON:0006555;1.04e-09;15!UBERON:0004819;1.04e-09;15!UBERON:0001285;1.04e-09;15!UBERON:0007684;1.04e-09;15!UBERON:0001225;8.69e-09;12!UBERON:0008987;8.69e-09;12!UBERON:0001851;5.77e-07;15!UBERON:0003688;7.20e-07;6!UBERON:0002358;7.20e-07;6!UBERON:0003684;7.20e-07;6!UBERON:0001178;7.20e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0000353;7.44e-10;15!UBERON:0006555;1.04e-09;15!UBERON:0004819;1.04e-09;15!UBERON:0001285;1.04e-09;15!UBERON:0007684;1.04e-09;15!UBERON:0001225;8.69e-09;12!UBERON:0008987;8.69e-09;12!UBERON:0001851;5.77e-07;15!UBERON:0003688;7.20e-07;6!UBERON:0002358;7.20e-07;6!UBERON:0003684;7.20e-07;6!UBERON:0001178;7.20e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0009569,1.59e-10,112;UBERON:0000353,4.68e-10,15;UBERON:0004211,6.26e-10,15;UBERON:0009773,6.26e-10,15;UBERON:0001231,6.26e-10,15;UBERON:0001285,6.26e-10,15;UBERON:0007684,6.26e-10,15;UBERON:0004208,6.26e-10,15;UBERON:0006555,2.88e-09,16;UBERON:0004819,2.88e-09,16;UBERON:0001225,5.87e-09,12;UBERON:0008987,5.87e-09,12;UBERON:0000080,3.75e-08,9;UBERON:0002120,3.75e-08,9;UBERON:0004875,3.75e-08,9;UBERON:0005721,3.75e-08,9;UBERON:0005754,3.75e-08,9;UBERON:0007297,3.75e-08,9;UBERON:0000058,8.64e-08,19;UBERON:0002417,9.22e-08,60;UBERON:0000916,9.22e-08,60;UBERON:0002113,2.69e-07,26;UBERON:0003918,2.69e-07,26;UBERON:0011143,2.69e-07,26;UBERON:0005095,2.69e-07,26;UBERON:0007687,2.69e-07,26;UBERON:0001851,4.25e-07,15;UBERON:0003688,8.59e-07,6;UBERON:0002358,8.59e-07,6;UBERON:0003684,8.59e-07,6;UBERON:0001178,8.59e-07,6 | |||
|phase1_expression=0.363356758541113,1.07050261945492,1.40954404095971,1.0007329835313,2.23480547213644,0,0,0,0.261185628199839,1.22866968250754,0.697801167972428,0,0,0.37129905888014,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0.246242116153576,0,0,0,0,0,0.0764134057479513,0.246301768349837,0.236132343941038,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,1.13362783106643,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,1.38856200643038,0,0,0.550236083880135,0,0,0,0,0,0,2.68468263302986,0,1.62028389576352,0,0.22452937262617,0.112611480483322,0,0.949265659568129,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,0,0.354668382198357,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0.448346041655403,0.822041490506354,0.809364721840658,0.98315564691574,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0.600182192168805,0.309157587715317,0,0.18611685633159,0.337552664482532,0.487185025805993,0,0.184099797284599,0,0,0.10075209822764,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,0,0,2.16563844500876,0,0,0,0,0,0,0,0,0,2.95262181849859,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,2.46331618947972,0.968532774145487,1.03664057770386,0.864719720501769,0.6312121671319,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0,0,0,0.517086863031111,3.57656445851882,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0,0,1.06617584622764,0.791951872933429,0,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0,0,0,0.448340575974109,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0.206768026122887,0,0,0,0,0.30239029332968,0.248107807818777,0,0.841980283299221,0.896974044789907,0.511707249066704,0.482561763430822,0,0.771048469013278,0,0.98552587216571,0.519254429183621,1.27831416305955,0.120859449591622,0,0,0,0,0,0.451199612907412,0.385076685522074,0.784349769176855,1.46139224653261,0.211103257785751,3.4120015221269,1.70093705276516,0.863663664408557,9.25363516141736,0.541892875087706,0,1.27438136522519,1.66215201785745,0.223874754722178,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0.154048617114644,0.307007349452259,0.275673144969061,0,0.145016693914229,0.170453254832202,0.0890320356467374,0,0,0,0,1.85938219718914,0,0.6970372701606,0,0,0,0,0,0,0,0.190630193923825,3.07077349573601,2.56763392820352,0,0,0.359744915166629,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0.66343897524122,0,0.578775534266688,0.655894752046633,0.202910376962704,0.30982349809975,0.281695602532241,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0.423347165447766,0,0.561594356226918,0.912938716132769,0,0,2.20079311142084,0,0,0,0,0.307240764308458,0.447352215784832,0.500547425135725,0,0,0,0.270455678475983,0,0,0,0.439524537815682,0,0.445773537109913,0.568272293612826,0,0.296964680832639,0,0,0,0.222617410045812,0,0,0.796991953004279,0.552567831062295,0,2.65898574505602,0,0,0.988551862620595,0,0.511572370226872,0.0986434056369336,0,0,0,0,0,0,0,5.07499702804355,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0.113942055847001,0,0,0.108647371922008,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.141353071433941,0,0,0.442287822516696,0,0,0.123563938946503,0.522109747527277,0,0,0,0,0.19566461893209,0.242780379534093,1.18375320854817,0,0,0.379119477770928,0.450970258243478,0.311064574191741,0,0,0,0,0.284609546029793,1.24807205711825,0,0,0.783532859223623,0.34945333648406,0.171986032471617,0,0,0,0,0,0,0.411125773940253,0.397429223405979,0.0633107959558787,0.195551382734803,0,0.85381197895741,0,0.288180834308212,0.458146384663663,0.171594997861965,0,0.248505071130865,0,0.135904206073614,0.209205692624666,0.101998217636322,0,0,0.136905378891993,0,0,0,0.279282401272254,0.458320848023367,0,0,0.429226048136571,0,0.0671834724867263,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.315222829196793,0.104909176269996,0,0,0,1.42939065274673,0,0,0,0,0.326587360109409,1.19730191562487,1.14929529049075,0.511164065356265,0.113312091520126,0,0,0,0,0,0,0.640724475406168,0,1.24271716604159,0,0.395223263795889,0.121792598380896,0,0,0.2506898940227,0,0.983617892129413,0.314108192500469,0,0.122026264901963,0,0,0,0.310482014706917,0,0,0.454947352624943,0,0.235265819698172,0,0,0.74627401443437,0.233713309847224,1.66441758450784,0,0,0,0.457680136793847,0.302461847526478,0.15543720058278,0,0,0,0.465788870628778,0,0.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| ||
|short_description=p9@HOXB6 | |short_description=p9@HOXB6 | ||
}} | }} |
Latest revision as of 07:19, 25 September 2015
Short description: | p9@HOXB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_HOXB6_5end |
Coexpression cluster: | NA |
Association with transcript: | 156bp_to_AB464576, CU677079, DQ890732, HQ447184_5end |
EntrezGene: | HOXB6 |
HGNC: | 5117 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 3.80e-13 | 3 |
bronchial smooth muscle cell | 3.91e-10 | 2 |
epithelial cell of nephron | 6.26e-10 | 15 |
kidney cortical cell | 5.87e-09 | 12 |
renal cortical epithelial cell | 5.87e-09 | 12 |
glomerular endothelial cell | 9.73e-09 | 5 |
kidney cell | 1.11e-08 | 17 |
kidney epithelial cell | 1.11e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
subdivision of trunk | 1.59e-10 | 112 |
parenchyma | 4.68e-10 | 15 |
nephron epithelium | 6.26e-10 | 15 |
renal tubule | 6.26e-10 | 15 |
nephron tubule | 6.26e-10 | 15 |
nephron | 6.26e-10 | 15 |
uriniferous tubule | 6.26e-10 | 15 |
nephrogenic mesenchyme | 6.26e-10 | 15 |
excretory tube | 2.88e-09 | 16 |
kidney epithelium | 2.88e-09 | 16 |
cortex of kidney | 5.87e-09 | 12 |
renal parenchyma | 5.87e-09 | 12 |
mesonephros | 3.75e-08 | 9 |
pronephros | 3.75e-08 | 9 |
nephrogenic cord | 3.75e-08 | 9 |
pronephric mesoderm | 3.75e-08 | 9 |
rostral part of nephrogenic cord | 3.75e-08 | 9 |
presumptive pronephric mesoderm | 3.75e-08 | 9 |
duct | 8.64e-08 | 19 |
abdominal segment of trunk | 9.22e-08 | 60 |
abdomen | 9.22e-08 | 60 |
kidney | 2.69e-07 | 26 |
kidney mesenchyme | 2.69e-07 | 26 |
upper urinary tract | 2.69e-07 | 26 |
kidney rudiment | 2.69e-07 | 26 |
kidney field | 2.69e-07 | 26 |
cortex | 4.25e-07 | 15 |
omentum | 8.59e-07 | 6 |
peritoneum | 8.59e-07 | 6 |
abdominal cavity | 8.59e-07 | 6 |
visceral peritoneum | 8.59e-07 | 6 |