FFCP PHASE1:Mm9::chr7:137690787..137690864,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:137690787..137690864,-
|short_description=p1@Nsmce4a
|description=CAGE_peak_1_at_Nsmce4a_5end
|association_with_transcript=30bp_to_ENSMUST00000160289,NM_00...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=67872 | |EntrezGene=67872 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=151 | |||
|TSSclassifier=NA | |||
|UniProt=G3XA30,E0CY57 | |UniProt=G3XA30,E0CY57 | ||
|association_with_transcript=30bp_to_ENSMUST00000160289,NM_001162855,uc009kad.2_5end | |||
|cluster_id=chr7:137690787..137690864,- | |||
|description=CAGE_peak_1_at_Nsmce4a_5end | |||
|id=chr7:137690787..137690864,- | |||
|ontology_enrichment_celltype=CL:0000988!4.11e-12!32;CL:0002032!4.11e-12!32;CL:0000037!4.11e-12!32;CL:0000566!4.11e-12!32;CL:0000837!4.11e-12!32;CL:0002031!2.86e-08!25;CL:0000050!7.67e-07!9;CL:0000542!8.00e-07!13;CL:0000051!8.00e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.11e-12,32;CL:0002032,4.11e-12,32;CL:0000037,4.11e-12,32;CL:0000837,4.11e-12,32;CL:0002031,2.86e-08,25;CL:0000050,7.67e-07,9;CL:0000542,8.00e-07,13;CL:0000051,8.00e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!5.01e-10!29;UBERON:0002390!1.56e-09!45;UBERON:0003061!1.56e-09!45;UBERON:0002193!3.62e-09!48;UBERON:0002405!3.72e-08!70;UBERON:0002370!4.63e-08!23;UBERON:0000974!4.63e-08!23;UBERON:0004807!4.63e-08!23;UBERON:0005058!4.63e-08!23;UBERON:0003351!4.63e-08!23;UBERON:0009113!4.63e-08!23;UBERON:0003295!4.63e-08!23;UBERON:0009722!4.63e-08!23;UBERON:0005562!4.63e-08!23;UBERON:0007690!4.63e-08!23;UBERON:0005057!8.00e-08!51;UBERON:0003408!1.05e-07!24;UBERON:0001048!2.21e-07!147;UBERON:0006562!4.11e-07!24;UBERON:0001557!4.11e-07!24;UBERON:0001042!4.11e-07!24;UBERON:0008814!4.11e-07!24;UBERON:0009145!4.11e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,5.01e-10,29;UBERON:0005057,5.01e-10,29;UBERON:0002390,1.56e-09,45;UBERON:0003061,1.56e-09,45;UBERON:0002193,3.62e-09,48;UBERON:0002405,3.62e-09,48;UBERON:0002370,4.63e-08,23;UBERON:0000974,4.63e-08,23;UBERON:0004807,4.63e-08,23;UBERON:0005058,4.63e-08,23;UBERON:0003351,4.63e-08,23;UBERON:0009113,4.63e-08,23;UBERON:0003295,4.63e-08,23;UBERON:0009722,4.63e-08,23;UBERON:0005562,4.63e-08,23;UBERON:0007690,4.63e-08,23;UBERON:0007811,6.02e-08,36;UBERON:0000153,1.05e-07,43;UBERON:0003408,1.05e-07,24;UBERON:0000077,1.28e-07,35;UBERON:0001048,2.16e-07,134;UBERON:0006562,4.11e-07,24;UBERON:0001557,4.11e-07,24;UBERON:0001042,4.11e-07,24;UBERON:0008814,4.11e-07,24;UBERON:0009145,4.11e-07,24 | |||
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| ||
|short_description=p1@Nsmce4a | |||
}} | }} |
Latest revision as of 00:17, 26 September 2015
Short description: | p1@Nsmce4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nsmce4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:151 |
Association with transcript: | 30bp_to_ENSMUST00000160289, NM_001162855, uc009kad.2_5end |
EntrezGene: | Nsmce4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.11e-12 | 32 |
hematopoietic oligopotent progenitor cell | 4.11e-12 | 32 |
hematopoietic stem cell | 4.11e-12 | 32 |
hematopoietic multipotent progenitor cell | 4.11e-12 | 32 |
hematopoietic lineage restricted progenitor cell | 2.86e-08 | 25 |
megakaryocyte-erythroid progenitor cell | 7.67e-07 | 9 |
lymphocyte | 8.00e-07 | 13 |
common lymphoid progenitor | 8.00e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 5.01e-10 | 29 |
immune organ | 5.01e-10 | 29 |
hematopoietic system | 1.56e-09 | 45 |
blood island | 1.56e-09 | 45 |
hemolymphoid system | 3.62e-09 | 48 |
immune system | 3.62e-09 | 48 |
thymus | 4.63e-08 | 23 |
neck | 4.63e-08 | 23 |
respiratory system epithelium | 4.63e-08 | 23 |
hemolymphoid system gland | 4.63e-08 | 23 |
pharyngeal epithelium | 4.63e-08 | 23 |
thymic region | 4.63e-08 | 23 |
pharyngeal gland | 4.63e-08 | 23 |
entire pharyngeal arch endoderm | 4.63e-08 | 23 |
thymus primordium | 4.63e-08 | 23 |
early pharyngeal endoderm | 4.63e-08 | 23 |
craniocervical region | 6.02e-08 | 36 |
anterior region of body | 1.05e-07 | 43 |
gland of gut | 1.05e-07 | 24 |
mixed endoderm/mesoderm-derived structure | 1.28e-07 | 35 |
primordium | 2.16e-07 | 134 |
pharynx | 4.11e-07 | 24 |
upper respiratory tract | 4.11e-07 | 24 |
chordate pharynx | 4.11e-07 | 24 |
pharyngeal arch system | 4.11e-07 | 24 |
pharyngeal region of foregut | 4.11e-07 | 24 |