FFCP PHASE1:Mm9::chr9:108998118..108998123,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235611 | |EntrezGene=235611 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=176 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CJH3,B2RWT9 | |UniProt=Q8CJH3,B2RWT9 | ||
|association_with_transcript=168bp_to_ENSMUST00000072093,NM_172775,uc009rrz.2_5end | |association_with_transcript=168bp_to_ENSMUST00000072093,NM_172775,uc009rrz.2_5end | ||
|cluster_id=chr9:108998118..108998123,+ | |||
|description=CAGE_peak_10_at_Plxnb1_5end | |description=CAGE_peak_10_at_Plxnb1_5end | ||
|id=chr9:108998118..108998123,+ | |id=chr9:108998118..108998123,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.07e-13!43;CL:0000221!1.09e-13!44;CL:0000133!1.09e-13!44;CL:0000055!1.30e-12!50;CL:0000540!6.42e-09!33;CL:0000047!6.42e-09!33;CL:0000031!6.42e-09!33;CL:0000404!6.42e-09!33;CL:0000393!1.35e-07!39;CL:0000211!1.35e-07!39;CL:0000117!1.55e-07!23;CL:0000337!1.55e-07!23 | |ontology_enrichment_celltype=CL:0002319!1.07e-13!43;CL:0000221!1.09e-13!44;CL:0000133!1.09e-13!44;CL:0000055!1.30e-12!50;CL:0000540!6.42e-09!33;CL:0000047!6.42e-09!33;CL:0000031!6.42e-09!33;CL:0000404!6.42e-09!33;CL:0000393!1.35e-07!39;CL:0000211!1.35e-07!39;CL:0000117!1.55e-07!23;CL:0000337!1.55e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0002453,4.41e-21,8;CL:0000333,1.14e-16,10;CL:0000095,1.14e-16,10;CL:0000243,1.14e-16,10;CL:0000123,1.14e-16,10;CL:0000125,1.14e-16,10;CL:0000030,1.14e-16,10;CL:0000339,1.14e-16,10;CL:0002319,3.16e-16,43;CL:0000221,8.75e-16,44;CL:0000133,8.75e-16,44;CL:0000128,8.99e-15,6;CL:0000126,8.99e-15,6;CL:0000127,8.99e-15,6;CL:0002610,4.84e-10,3;CL:0002321,1.03e-08,70;CL:0002605,3.40e-08,2;CL:0002604,3.40e-08,2;CL:0000878,4.64e-08,2;CL:0000129,4.64e-08,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.84e-25!102;UBERON:0000924!8.84e-25!102;UBERON:0006601!8.84e-25!102;UBERON:0000073!2.01e-21!75;UBERON:0001016!2.01e-21!75;UBERON:0001017!6.77e-21!73;UBERON:0005743!6.77e-21!73;UBERON:0002346!3.65e-18!71;UBERON:0003075!3.65e-18!71;UBERON:0007284!3.65e-18!71;UBERON:0000033!5.77e-16!63;UBERON:0001049!8.11e-14!52;UBERON:0005068!8.11e-14!52;UBERON:0006241!8.11e-14!52;UBERON:0007135!8.11e-14!52;UBERON:0000955!2.20e-13!50;UBERON:0006238!2.20e-13!50;UBERON:0002616!1.00e-12!49;UBERON:0003056!1.45e-10!49;UBERON:0002020!1.29e-09!34;UBERON:0003080!1.02e-08!40;UBERON:0007811!1.29e-08!86;UBERON:0000153!3.70e-08!94;UBERON:0002780!4.03e-08!39;UBERON:0001890!4.03e-08!39;UBERON:0006240!4.03e-08!39;UBERON:0002791!1.92e-07!29;UBERON:0003528!1.92e-07!29;UBERON:0001893!1.92e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.16e-23,73;UBERON:0001016,6.57e-23,75;UBERON:0004121,8.64e-19,95;UBERON:0000924,8.64e-19,95;UBERON:0006601,8.64e-19,95;UBERON:0000073,3.20e-12,54;UBERON:0004684,4.84e-10,3;UBERON:0002275,4.84e-10,3;UBERON:0002346,8.76e-10,64;UBERON:0003075,8.76e-10,64;UBERON:0007284,8.76e-10,64;UBERON:0001049,1.24e-09,52;UBERON:0005068,1.24e-09,52;UBERON:0006241,1.24e-09,52;UBERON:0007135,1.24e-09,52;UBERON:0000955,2.65e-09,47;UBERON:0006238,2.65e-09,47;UBERON:0010371,3.50e-08,73;UBERON:0002616,4.80e-08,46;UBERON:0001896,1.69e-07,2;UBERON:0002298,1.69e-07,2;UBERON:0005290,1.69e-07,2;UBERON:0010096,1.69e-07,2;UBERON:0002950,1.96e-07,4;UBERON:0001891,1.96e-07,4;UBERON:0009616,1.96e-07,4;UBERON:0010286,1.96e-07,4;UBERON:0003076,9.77e-07,12;UBERON:0003057,9.77e-07,12 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70642765846759,3.07560655828261,5.24960727500565,2.09979632438044,2.87505128729943,0,0,0,0.257259436035947,0,0.515672092277442,0,0,1.26766280701236,0.677689064138264,0,0,0,0,2.09720077362883,6.53171119046643,0.103689612308478,0.405017814995072,0,1.14260393761521,0.441737081903227,0.244981598429908,0.383381884072945,0,1.10115880999389,2.55374676170375,1.22885226604995,0.395658863190582,0.731901148819277,0.52091337055676,1.11673199600552,1.12552522006336,0.916789486660861,0.883885756421003,0.711858403995515,0.186399445825301,0.075726193333184,0.529000920747499,0.289864488701678,0.860423876981386,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.593768556259299,0,0,0.230615497256059,0.150722640552623,0.23517741427141,0.879666139307728,0,0.144599356919912,0,0,0,0,0,0.292780797011547,0.41889341362691,0.255457055208591,0,0,0,1.49790639404823,0.915001205637253,0.251308704225729,0.521472960576829,0.767146371990992,1.24672826735736,1.29793010454206,0.203678727700633,0,0,0.210441855886474,0.260240885925407,0,0.900310649026746,0.150704817835715,0.272145996605311,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,1.68231958851302,0.411618449517138,0,0,0,0,0,0.403367049246685,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0,1.1270773567308,0,0.193952487167626,0.140271639780637,0.252946148497029,0,0.156998727841375,0.123397163921801,0,0,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0,0,0,0.482443521363367,0.184753190166605,0.189491411770485,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0.44292937929755,0.159454768657487,0,0,0.144649058581512,0,0,0,0,1.44495530989013,1.40654023910644,0,0,0.315508219416257,1.17131623288992,1.07711698866399,0.477937595905104,0.222798674082394,0,0.809621403349789,0.584511715822624,0,1.28528526568723,0.567760340833074,0,0,0.659880491890142,0,0.485561272309963,0,0,0,0,0.516856586336442,0,0,0,0,0,0.680879211507576,0,0.388076051348264,0,0.354680467284547,0,0,0.304464949114599,0,0.847328283455281,0.220528398054962,0.16488625294148,0.322928853391811,0,0.119372344003136,0.328281799490123,0,2.22510362412612,0,0,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0.418176592028937,0.218362563746178,0.134864346384821,0.165306911450672,0.26175594198403,0,1.24267862617385,0,0.149516546043979,0.330916980914195,0,0.258319646955462,0,0.352071715937262,0.13020438484395,0.104859344425711,0,0,0,0.202725215290164,0,0.25984164595559,0,0,0.120195449519969,0,0,0.15241361331,0,0,0,0,0.453460767230423,0,0,0,0.19318959403219,0,0.183151624267265,0.214368379079066,0,0,0,0.572895513439397,0.68741272937475,0.685082519770642,0,0.675022500231806,1.80128481289688,0,0,0,0,0,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0,0.0936415074698824,0.256100609619477,0,0,0.115884325944855,0.192909220463705,0,0,0.342869252385415,0.177475806159338,0.238436189947321,0.145346416632329,0.188218760830661,0,0,0,0,1.12228454331548,0,0,0,0,0.192906610981141,0.249810577937946,0,0.214871054048298,0.191288332068843,0,0.231867835620421 | |phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70642765846759,3.07560655828261,5.24960727500565,2.09979632438044,2.87505128729943,0,0,0,0.257259436035947,0,0.515672092277442,0,0,1.26766280701236,0.677689064138264,0,0,0,0,2.09720077362883,6.53171119046643,0.103689612308478,0.405017814995072,0,1.14260393761521,0.441737081903227,0.244981598429908,0.383381884072945,0,1.10115880999389,2.55374676170375,1.22885226604995,0.395658863190582,0.731901148819277,0.52091337055676,1.11673199600552,1.12552522006336,0.916789486660861,0.883885756421003,0.711858403995515,0.186399445825301,0.075726193333184,0.529000920747499,0.289864488701678,0.860423876981386,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0.593768556259299,0,0,0.230615497256059,0.150722640552623,0.23517741427141,0.879666139307728,0,0.144599356919912,0,0,0,0,0,0.292780797011547,0.41889341362691,0.255457055208591,0,0,0,1.49790639404823,0.915001205637253,0.251308704225729,0.521472960576829,0.767146371990992,1.24672826735736,1.29793010454206,0.203678727700633,0,0,0.210441855886474,0.260240885925407,0,0.900310649026746,0.150704817835715,0.272145996605311,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.189106080167819,0.175951124163949,0.219195732427575,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0.0810688095458557,0.146199987425332,0,0.134206418760372,1.68231958851302,0.411618449517138,0,0,0,0,0,0.403367049246685,0,0,0,0,0,0,0.19496408711912,0,0.216138049874694,0,0,0,1.1270773567308,0,0.193952487167626,0.140271639780637,0.252946148497029,0,0.156998727841375,0.123397163921801,0,0,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0,0,0,0.482443521363367,0.184753190166605,0.189491411770485,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0.44292937929755,0.159454768657487,0,0,0.144649058581512,0,0,0,0,1.44495530989013,1.40654023910644,0,0,0.315508219416257,1.17131623288992,1.07711698866399,0.477937595905104,0.222798674082394,0,0.809621403349789,0.584511715822624,0,1.28528526568723,0.567760340833074,0,0,0.659880491890142,0,0.485561272309963,0,0,0,0,0.516856586336442,0,0,0,0,0,0.680879211507576,0,0.388076051348264,0,0.354680467284547,0,0,0.304464949114599,0,0.847328283455281,0.220528398054962,0.16488625294148,0.322928853391811,0,0.119372344003136,0.328281799490123,0,2.22510362412612,0,0,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0.418176592028937,0.218362563746178,0.134864346384821,0.165306911450672,0.26175594198403,0,1.24267862617385,0,0.149516546043979,0.330916980914195,0,0.258319646955462,0,0.352071715937262,0.13020438484395,0.104859344425711,0,0,0,0.202725215290164,0,0.25984164595559,0,0,0.120195449519969,0,0,0.15241361331,0,0,0,0,0.453460767230423,0,0,0,0.19318959403219,0,0.183151624267265,0.214368379079066,0,0,0,0.572895513439397,0.68741272937475,0.685082519770642,0,0.675022500231806,1.80128481289688,0,0,0,0,0,0,0,0,0.222246727801615,0,0.320919209591815,0,0,0,0.0936415074698824,0.256100609619477,0,0,0.115884325944855,0.192909220463705,0,0,0.342869252385415,0.177475806159338,0.238436189947321,0.145346416632329,0.188218760830661,0,0,0,0,1.12228454331548,0,0,0,0,0.192906610981141,0.249810577937946,0,0.214871054048298,0.191288332068843,0,0.231867835620421 | ||
|short_description=p10@Plxnb1 | |short_description=p10@Plxnb1 | ||
}} | }} |
Latest revision as of 04:55, 26 September 2015
Short description: | p10@Plxnb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_Plxnb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:176 |
Association with transcript: | 168bp_to_ENSMUST00000072093, NM_172775, uc009rrz.2_5end |
EntrezGene: | Plxnb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 4.41e-21 | 8 |
migratory neural crest cell | 1.14e-16 | 10 |
neuron associated cell | 1.14e-16 | 10 |
glial cell (sensu Vertebrata) | 1.14e-16 | 10 |
neuron associated cell (sensu Vertebrata) | 1.14e-16 | 10 |
glial cell | 1.14e-16 | 10 |
glioblast | 1.14e-16 | 10 |
glioblast (sensu Vertebrata) | 1.14e-16 | 10 |
neural cell | 3.16e-16 | 43 |
ectodermal cell | 8.75e-16 | 44 |
neurectodermal cell | 8.75e-16 | 44 |
oligodendrocyte | 8.99e-15 | 6 |
macroglial cell | 8.99e-15 | 6 |
astrocyte | 8.99e-15 | 6 |
raphe nuclei neuron | 4.84e-10 | 3 |
embryonic cell | 1.03e-08 | 70 |
astrocyte of the cerebral cortex | 3.40e-08 | 2 |
astrocyte of the hippocampus | 3.40e-08 | 2 |
central nervous system macrophage | 4.64e-08 | 2 |
microglial cell | 4.64e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.16e-23 | 73 |
nervous system | 6.57e-23 | 75 |
ectoderm-derived structure | 8.64e-19 | 95 |
ectoderm | 8.64e-19 | 95 |
presumptive ectoderm | 8.64e-19 | 95 |
regional part of nervous system | 3.20e-12 | 54 |
raphe nuclei | 4.84e-10 | 3 |
reticular formation | 4.84e-10 | 3 |
neurectoderm | 8.76e-10 | 64 |
neural plate | 8.76e-10 | 64 |
presumptive neural plate | 8.76e-10 | 64 |
neural tube | 1.24e-09 | 52 |
neural rod | 1.24e-09 | 52 |
future spinal cord | 1.24e-09 | 52 |
neural keel | 1.24e-09 | 52 |
brain | 2.65e-09 | 47 |
future brain | 2.65e-09 | 47 |
ecto-epithelium | 3.50e-08 | 73 |
regional part of brain | 4.80e-08 | 46 |
medulla oblongata | 1.69e-07 | 2 |
brainstem | 1.69e-07 | 2 |
myelencephalon | 1.69e-07 | 2 |
future myelencephalon | 1.69e-07 | 2 |
regional part of midbrain | 1.96e-07 | 4 |
midbrain | 1.96e-07 | 4 |
presumptive midbrain | 1.96e-07 | 4 |
midbrain neural tube | 1.96e-07 | 4 |
posterior neural tube | 9.77e-07 | 12 |
chordal neural plate | 9.77e-07 | 12 |