FFCP PHASE1:Mm9::chr4:138528800..138528835,+: Difference between revisions
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{{FFCP|EntrezGene=77056|HGNC=|UniProt=Q91WU4,E9QPL6,A2ALL4|association_with_transcript=0bp_to_ENSMUST00000043042,ENSMUST00000050949,ENSMUST00000084208,ENSMUST00000123636,ENSMUST00000124835,NM_029857,uc008vlp.2_5end|description=CAGE_peak_1_at_Tmco4_5end|id=chr4:138528800..138528835,+|ontology_enrichment_celltype=CL:0000063!1.00e-13!66;CL:0002320!1.84e-11!46;CL:0000134!1.84e-11!46;CL:0000988!5.33e-10!32;CL:0002032!5.33e-10!32;CL:0000037!5.33e-10!32;CL:0000566!5.33e-10!32;CL:0000837!5.33e-10!32;CL:0000219!1.16e-09!54;CL:0002031!2.76e-08!25;CL:0000838!1.19e-07!12;CL:0000738!1.95e-07!17;CL:0002087!1.95e-07!17;CL:0000084!5.28e-07!11;CL:0000827!5.28e-07!11|ontology_enrichment_celltype_v019_2=CL:0002320,5.28e-12,46;CL:0000134,5.28e-12,46;CL:0000988,1.68e-10,32;CL:0002032,1.68e-10,32;CL:0000037,1.68e-10,32;CL:0000837,1.68e-10,32;CL:0000219,5.55e-10,54;CL:0002031,1.20e-08,25;CL:0000838,6.95e-08,12;CL:0000738,9.55e-08,17;CL:0002087,9.55e-08,17;CL:0000084,3.27e-07,11;CL:0000827,3.27e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!3.85e-17!70;UBERON:0001007!1.49e-16!128;UBERON:0001555!1.49e-16!128;UBERON:0007026!1.49e-16!128;UBERON:0004119!1.70e-16!130;UBERON:0000925!1.70e-16!130;UBERON:0006595!1.70e-16!130;UBERON:0004921!1.14e-15!126;UBERON:0004185!1.14e-15!126;UBERON:0003929!5.08e-14!55;UBERON:0000490!3.04e-13!66;UBERON:0002193!3.36e-13!48;UBERON:0002390!8.41e-12!45;UBERON:0003061!8.41e-12!45;UBERON:0005911!9.30e-12!69;UBERON:0002384!1.84e-11!46;UBERON:0005057!1.58e-10!51;UBERON:0000926!7.30e-10!193;UBERON:0004120!7.30e-10!193;UBERON:0006603!7.30e-10!193;UBERON:0000077!1.70e-08!97;UBERON:0003104!3.89e-08!131;UBERON:0009142!3.89e-08!131;UBERON:0001041!6.07e-08!92;UBERON:0000344!1.42e-07!15;UBERON:0002368!3.65e-07!60;UBERON:0004177!5.08e-07!29;UBERON:0003408!6.02e-07!24;UBERON:0002370!6.07e-07!23;UBERON:0000974!6.07e-07!23;UBERON:0004807!6.07e-07!23;UBERON:0005058!6.07e-07!23;UBERON:0003351!6.07e-07!23;UBERON:0009113!6.07e-07!23;UBERON:0003295!6.07e-07!23;UBERON:0009722!6.07e-07!23;UBERON:0005562!6.07e-07!23;UBERON:0007690!6.07e-07!23;UBERON:0002530!6.30e-07!65;UBERON:0003081!6.67e-07!88;UBERON:0001242!9.44e-07!13;UBERON:0000060!9.44e-07!13;UBERON:0001262!9.44e-07!13;UBERON:0004786!9.44e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.23e-16,116;UBERON:0001555,1.23e-16,116;UBERON:0007026,1.23e-16,116;UBERON:0004119,1.49e-16,118;UBERON:0000925,1.49e-16,118;UBERON:0006595,1.49e-16,118;UBERON:0004921,9.91e-16,114;UBERON:0003929,1.10e-14,55;UBERON:0002193,4.49e-14,48;UBERON:0002405,4.49e-14,48;UBERON:0000490,1.31e-13,66;UBERON:0002390,1.32e-12,45;UBERON:0003061,1.32e-12,45;UBERON:0002384,5.28e-12,46;UBERON:0005911,8.53e-12,69;UBERON:0000077,4.13e-08,35;UBERON:0001041,6.10e-08,80;UBERON:0000344,8.33e-08,15;UBERON:0004177,1.32e-07,29;UBERON:0005057,1.32e-07,29;UBERON:0002370,1.43e-07,23;UBERON:0000974,1.43e-07,23;UBERON:0004807,1.43e-07,23;UBERON:0005058,1.43e-07,23;UBERON:0003351,1.43e-07,23;UBERON:0009113,1.43e-07,23;UBERON:0003295,1.43e-07,23;UBERON:0009722,1.43e-07,23;UBERON:0005562,1.43e-07,23;UBERON:0007690,1.43e-07,23;UBERON:0003408,1.45e-07,24;UBERON:0002368,3.04e-07,60;UBERON:0000160,3.58e-07,31;UBERON:0002530,3.92e-07,65;UBERON:0001242,5.96e-07,13;UBERON:0001262,5.96e-07,13;UBERON:0004786,5.96e-07,13;UBERON:0004923,6.44e-07,24;UBERON:0006562,8.58e-07,24;UBERON:0001557,8.58e-07,24;UBERON:0001042,8.58e-07,24;UBERON:0008814,8.58e-07,24;UBERON:0009145,8.58e-07,24|phase1_expression=0.960893082628764,4.88565570695105,4.54999239389536,4.83942738090928,8.01433167914156,4.19698179779725,4.67225281191051,13.1705789910408,7.03943610758334,5.38348410540585,5.30775701499065,5.90313976565489,17.1200729931206,15.4734112281625,2.33176833270964,5.06188168474565,1.39912375625629,14.9844528545163,13.0258711925452,14.004858509335,2.29616883407888,6.45391182805754,6.00759515019551,5.11975752938901,7.11168771308227,5.7423196411502,2.58457197695445,3.878482188346,6.84084310042946,9.57714493087737,3.76941868114018,0.635030673459631,3.07532393792285,0,10.9763615505484,7.14808975041517,8.16677425049476,4.60384793810598,6.2506827561904,6.28228492768558,2.35292595212406,4.09827290975067,5.34061388334269,1.88845226963366,1.62203089951223,1.46837401729345,3.12956537739216,1.74420125104357,3.07560655828261,1.55543919259427,2.79972843250725,0,11.5769998179838,7.25362142011344,10.0828139742739,1.80081605225163,1.71920063963254,1.03134418455488,0,0,0.633831403506179,2.37191172448392,1.77858959222228,4.04954872776629,5.93319817540185,4.9733608046227,2.69640099466564,2.68952813725088,0.103689612308478,0.540023753326763,0,0.285650984403804,0.883474163806454,0.367472397644862,0,0,0,0.255374676170375,0.153606533256243,0,0.182975287204819,0,0,2.25105044012672,0.30559649555362,0,0.427115042397309,0,0.757261933331841,0.755715601067855,3.47837386442013,4.30211938490693,4.0798280022465,2.15881276655127,3.89865850468601,6.2723764193627,3.37066608316204,1.53387290320252,1.03914401841148,3.5333957451034,1.26759077799012,0,0,7.11066703153331,2.16491041011214,1.01343946190039,5.56076889516262,2.39786147410026,8.2860122767095,2.9688427812965,0.693941307064543,0.913396434936424,1.84492397804847,1.65794904607885,4.70354828542819,2.38766523526383,1.97755974187499,3.32578520915797,2.65383165584962,1.61766849947409,1.54589062922275,2.42437626567611,3.72783522436244,0.585561594023094,0.41889341362691,7.66371165625774,8.8663192134381,11.3981518888747,9.91147771169905,0.449371918214468,0,0.125654352112864,0.347648640384553,0,0.41557608911912,0.324482526135515,2.34230536855727,4.85187185379363,4.0435641349388,1.89397670297827,0.260240885925407,0.459804208866946,0.180062129805349,0.30140963567143,0.408218994907967,0.640568601424249,0.562210347358373,2.58703370739016,0.862271971731369,0.189106080167819,1.05570674498369,0.876782929710299,1.39023624612799,1.74126083261083,1.02891068203972,0.59710280045548,4.91549231119264,3.86021860672073,5.39910648851626,0.828503090142008,1.17263029990548,0.720248245844059,0.710234206755631,1.96764231747404,0.771335564436891,2.32533944750408,2.41446061259657,2.80236821681207,2.63295759861569,1.31333971263276,1.21603214318784,1.60819986167866,1.3173006917463,2.28150911892632,0.420579897128254,0.205809224758569,13.8775888853195,3.43785736662608,0.213288250535234,0,0.902072229254653,1.81515172161008,0.667134131534611,1.71203063501303,7.59246498471219,2.47048432086016,3.51869292320377,5.37182474511107,3.50935356814416,7.19055526923377,6.05186539649144,8.56307474993779,0.189667900953082,0.799739588268102,2.25415471346161,0.814605311381257,1.35766741017338,2.31448205638051,2.21327879934901,2.80459281161244,2.19798218977925,2.09775178667061,4.44678940630723,0.83422552858047,1.17935397067922,1.34917267430912,1.42002084971952,2.894125917029,3.05551022137704,2.30156909960649,4.70192157647603,4.11842119782122,10.0637744569148,11.1642284300551,6.55279113540577,6.56705082662491,4.30553792452589,6.27176577772377,3.14080423283228,0.568474235311454,0.325929952884052,0.509235257325564,1.87752198630802,1.67506257441816,0.952174563544055,3.12213836572478,0.788175720530955,3.10050565508285,1.75400245523236,3.4411296090305,3.62638461918381,2.31438493730419,9.04747703635634,8.15858525728064,2.95058563811422,2.20749397043786,0.642202359951168,0.234423373184406,0,1.00988370881749,0.315508219416257,0,0.215423397732799,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0,0,1.41940085208269,0.712262414669021,2.44330439030364,3.62934270539578,1.32745138339963,0.728341908464944,1.209294227859,1.13163047853539,2.06711325016541,1.53717573971964,3.35956781118687,4.72593848320757,1.06949213515416,2.84433082142234,2.10837217149998,3.09406629744561,4.76615448055303,0,0.129358683782755,0.428674070063185,1.06404140185364,0.535106452806212,0.822745103010605,3.34911444026059,2.11204537257339,1.69465656691056,3.08739757276947,2.63818004706368,1.77610869365496,1.93001359770099,1.79058516004705,2.46211349617592,8.16146342563582,0.556275906031529,3.93003025835061,2.06386867963222,0.370389054739423,3.57900068308913,3.2806614653046,5.94823250336959,11.2185763795945,8.39708713941948,10.9177979305495,1.90934123603023,0.474503990371703,1.62655573701479,0.972048067396211,1.25452977608681,1.31017538247707,3.10187996685088,4.54594006489348,3.66458318777641,4.27729411862916,2.4853572523477,0.56369293868419,0.149516546043979,0.66183396182839,1.36115831840833,1.03327858782185,1.18269287843545,2.69921648885234,2.21347454234715,2.20204623293993,2.17425708743405,1.15212002503146,1.89606672376907,3.64905387522296,3.18403967210964,5.06691209613401,6.26593434836185,5.56307793387542,7.69250876927801,7.38447635872886,4.84638959751109,7.62068066549998,4.94048307170519,6.1398464866044,5.19543944857779,5.02570679380746,0.906921534460845,0.887943813496259,0.807424709485281,0.671538465456314,4.25017106870819,1.87682475451182,3.47988086107804,4.28736758158132,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0.207574695168353,0,0.170733605754134,0.972426868273176,0.419226325255965,0.551530525350042,0.44449345560323,1.23621034343337,0.64183841918363,1.51618327058278,1.01391719956096,0.754505365544305,0.936415074698824,1.28050304809739,1.26358031702349,0.476293691283074,0.811190281613988,0.77163688185482,2.47251540481984,1.32479028120958,1.02860775715625,1.24233064311536,1.90748951957857,1.59881058295561,0.658765662907314,0.930760686808441,1.28049581010941,0.263069711437843,1.08643291076689,1.12228454331548,1.18635018124174,1.57607171800902,1.22769312950907,1.08455788830176,1.15743966588685,0.749431733813838,0.701794825336225,3.00819475667618,2.29545998482612,1.76473135295612,1.39120701372253|short_description=p1@Tmco4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=77056 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q91WU4,E9QPL6,A2ALL4 | |||
|association_with_transcript=0bp_to_ENSMUST00000043042,ENSMUST00000050949,ENSMUST00000084208,ENSMUST00000123636,ENSMUST00000124835,NM_029857,uc008vlp.2_5end | |||
|cluster_id=chr4:138528800..138528835,+ | |||
|description=CAGE_peak_1_at_Tmco4_5end | |||
|id=chr4:138528800..138528835,+ | |||
|ontology_enrichment_celltype=CL:0000063!1.00e-13!66;CL:0002320!1.84e-11!46;CL:0000134!1.84e-11!46;CL:0000988!5.33e-10!32;CL:0002032!5.33e-10!32;CL:0000037!5.33e-10!32;CL:0000566!5.33e-10!32;CL:0000837!5.33e-10!32;CL:0000219!1.16e-09!54;CL:0002031!2.76e-08!25;CL:0000838!1.19e-07!12;CL:0000738!1.95e-07!17;CL:0002087!1.95e-07!17;CL:0000084!5.28e-07!11;CL:0000827!5.28e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002320,5.28e-12,46;CL:0000134,5.28e-12,46;CL:0000988,1.68e-10,32;CL:0002032,1.68e-10,32;CL:0000037,1.68e-10,32;CL:0000837,1.68e-10,32;CL:0000219,5.55e-10,54;CL:0002031,1.20e-08,25;CL:0000838,6.95e-08,12;CL:0000738,9.55e-08,17;CL:0002087,9.55e-08,17;CL:0000084,3.27e-07,11;CL:0000827,3.27e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!3.85e-17!70;UBERON:0001007!1.49e-16!128;UBERON:0001555!1.49e-16!128;UBERON:0007026!1.49e-16!128;UBERON:0004119!1.70e-16!130;UBERON:0000925!1.70e-16!130;UBERON:0006595!1.70e-16!130;UBERON:0004921!1.14e-15!126;UBERON:0004185!1.14e-15!126;UBERON:0003929!5.08e-14!55;UBERON:0000490!3.04e-13!66;UBERON:0002193!3.36e-13!48;UBERON:0002390!8.41e-12!45;UBERON:0003061!8.41e-12!45;UBERON:0005911!9.30e-12!69;UBERON:0002384!1.84e-11!46;UBERON:0005057!1.58e-10!51;UBERON:0000926!7.30e-10!193;UBERON:0004120!7.30e-10!193;UBERON:0006603!7.30e-10!193;UBERON:0000077!1.70e-08!97;UBERON:0003104!3.89e-08!131;UBERON:0009142!3.89e-08!131;UBERON:0001041!6.07e-08!92;UBERON:0000344!1.42e-07!15;UBERON:0002368!3.65e-07!60;UBERON:0004177!5.08e-07!29;UBERON:0003408!6.02e-07!24;UBERON:0002370!6.07e-07!23;UBERON:0000974!6.07e-07!23;UBERON:0004807!6.07e-07!23;UBERON:0005058!6.07e-07!23;UBERON:0003351!6.07e-07!23;UBERON:0009113!6.07e-07!23;UBERON:0003295!6.07e-07!23;UBERON:0009722!6.07e-07!23;UBERON:0005562!6.07e-07!23;UBERON:0007690!6.07e-07!23;UBERON:0002530!6.30e-07!65;UBERON:0003081!6.67e-07!88;UBERON:0001242!9.44e-07!13;UBERON:0000060!9.44e-07!13;UBERON:0001262!9.44e-07!13;UBERON:0004786!9.44e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.23e-16,116;UBERON:0001555,1.23e-16,116;UBERON:0007026,1.23e-16,116;UBERON:0004119,1.49e-16,118;UBERON:0000925,1.49e-16,118;UBERON:0006595,1.49e-16,118;UBERON:0004921,9.91e-16,114;UBERON:0003929,1.10e-14,55;UBERON:0002193,4.49e-14,48;UBERON:0002405,4.49e-14,48;UBERON:0000490,1.31e-13,66;UBERON:0002390,1.32e-12,45;UBERON:0003061,1.32e-12,45;UBERON:0002384,5.28e-12,46;UBERON:0005911,8.53e-12,69;UBERON:0000077,4.13e-08,35;UBERON:0001041,6.10e-08,80;UBERON:0000344,8.33e-08,15;UBERON:0004177,1.32e-07,29;UBERON:0005057,1.32e-07,29;UBERON:0002370,1.43e-07,23;UBERON:0000974,1.43e-07,23;UBERON:0004807,1.43e-07,23;UBERON:0005058,1.43e-07,23;UBERON:0003351,1.43e-07,23;UBERON:0009113,1.43e-07,23;UBERON:0003295,1.43e-07,23;UBERON:0009722,1.43e-07,23;UBERON:0005562,1.43e-07,23;UBERON:0007690,1.43e-07,23;UBERON:0003408,1.45e-07,24;UBERON:0002368,3.04e-07,60;UBERON:0000160,3.58e-07,31;UBERON:0002530,3.92e-07,65;UBERON:0001242,5.96e-07,13;UBERON:0001262,5.96e-07,13;UBERON:0004786,5.96e-07,13;UBERON:0004923,6.44e-07,24;UBERON:0006562,8.58e-07,24;UBERON:0001557,8.58e-07,24;UBERON:0001042,8.58e-07,24;UBERON:0008814,8.58e-07,24;UBERON:0009145,8.58e-07,24 | |||
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| |||
|short_description=p1@Tmco4 | |||
}} |
Latest revision as of 14:28, 26 September 2015
Short description: | p1@Tmco4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tmco4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000043042, ENSMUST00000050949, ENSMUST00000084208, ENSMUST00000123636, ENSMUST00000124835, NM_029857, uc008vlp.2_5end |
EntrezGene: | Tmco4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue cell | 5.28e-12 | 46 |
mesenchymal cell | 5.28e-12 | 46 |
hematopoietic cell | 1.68e-10 | 32 |
hematopoietic oligopotent progenitor cell | 1.68e-10 | 32 |
hematopoietic stem cell | 1.68e-10 | 32 |
hematopoietic multipotent progenitor cell | 1.68e-10 | 32 |
motile cell | 5.55e-10 | 54 |
hematopoietic lineage restricted progenitor cell | 1.20e-08 | 25 |
lymphoid lineage restricted progenitor cell | 6.95e-08 | 12 |
leukocyte | 9.55e-08 | 17 |
nongranular leukocyte | 9.55e-08 | 17 |
T cell | 3.27e-07 | 11 |
pro-T cell | 3.27e-07 | 11 |