FFCP PHASE1:Mm9::chr9:5308842..5308873,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12363 | |EntrezGene=12363 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2684 | |MCL_coexpression_id=2684 | ||
|TSSclassifier=NA | |||
|UniProt=P70343,C6L648 | |UniProt=P70343,C6L648 | ||
|association_with_transcript=0bp_to_ENSMUST00000027012,ENSMUST00000152651,ENSMUST00000160064,ENSMUST00000160521,NM_007609,uc009obs.2,uc009obt.2,uc009obu.2_5end | |association_with_transcript=0bp_to_ENSMUST00000027012,ENSMUST00000152651,ENSMUST00000160064,ENSMUST00000160521,NM_007609,uc009obs.2,uc009obt.2,uc009obu.2_5end | ||
|cluster_id=chr9:5308842..5308873,+ | |||
|description=CAGE_peak_1_at_Casp4_5end | |description=CAGE_peak_1_at_Casp4_5end | ||
|id=chr9:5308842..5308873,+ | |id=chr9:5308842..5308873,+ | ||
|ontology_enrichment_celltype=CL:0000063!6.42e-07!66;CL:0002076!7.40e-07!15 | |ontology_enrichment_celltype=CL:0000063!6.42e-07!66;CL:0002076!7.40e-07!15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.75e-07,15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004923!1.99e-09!24;UBERON:0000344!4.56e-09!15;UBERON:0002193!1.05e-08!48;UBERON:0004119!2.46e-08!130;UBERON:0000925!2.46e-08!130;UBERON:0006595!2.46e-08!130;UBERON:0001007!6.72e-08!128;UBERON:0001555!6.72e-08!128;UBERON:0007026!6.72e-08!128;UBERON:0001242!8.71e-08!13;UBERON:0000060!8.71e-08!13;UBERON:0001262!8.71e-08!13;UBERON:0004786!8.71e-08!13;UBERON:0003081!1.05e-07!88;UBERON:0002204!2.65e-07!32;UBERON:0002390!3.09e-07!45;UBERON:0003061!3.09e-07!45;UBERON:0004921!3.98e-07!126;UBERON:0004185!3.98e-07!126 | |ontology_enrichment_uberon=UBERON:0004923!1.99e-09!24;UBERON:0000344!4.56e-09!15;UBERON:0002193!1.05e-08!48;UBERON:0004119!2.46e-08!130;UBERON:0000925!2.46e-08!130;UBERON:0006595!2.46e-08!130;UBERON:0001007!6.72e-08!128;UBERON:0001555!6.72e-08!128;UBERON:0007026!6.72e-08!128;UBERON:0001242!8.71e-08!13;UBERON:0000060!8.71e-08!13;UBERON:0001262!8.71e-08!13;UBERON:0004786!8.71e-08!13;UBERON:0003081!1.05e-07!88;UBERON:0002204!2.65e-07!32;UBERON:0002390!3.09e-07!45;UBERON:0003061!3.09e-07!45;UBERON:0004921!3.98e-07!126;UBERON:0004185!3.98e-07!126 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,8.62e-11,31;UBERON:0004119,4.76e-10,118;UBERON:0000925,4.76e-10,118;UBERON:0006595,4.76e-10,118;UBERON:0004923,1.03e-09,24;UBERON:0001007,1.47e-09,116;UBERON:0001555,1.47e-09,116;UBERON:0007026,1.47e-09,116;UBERON:0000344,2.44e-09,15;UBERON:0002193,5.81e-09,48;UBERON:0002405,5.81e-09,48;UBERON:0004921,1.13e-08,114;UBERON:0005409,1.59e-08,47;UBERON:0001242,5.18e-08,13;UBERON:0001262,5.18e-08,13;UBERON:0004786,5.18e-08,13;UBERON:0002390,1.92e-07,45;UBERON:0003061,1.92e-07,45;UBERON:0002204,3.32e-07,32;UBERON:0003081,5.01e-07,87 | |||
|phase1_expression=0.480446541314382,136.79835979463,140.594764971367,26.3143863836942,15.5277676283368,77.5602236232931,106.760976752155,14.2035655785734,17.0354353803517,4.44722600011788,13.8686554262659,4.94587385771086,2.22560948910567,1.04904482902797,3.99731714178795,6.88415909125408,4.19737126876888,34.3853760240479,29.2053743580224,24.6145998042858,4.76242424845991,3.07801948722744,0.261199789138935,102.39515058778,116.310505501055,144.13222299287,133.105456813154,140.702714943886,97.6720376005762,54.438508028145,127.716774137456,0,0,0,26.285497397366,8.6442015586416,13.271008157054,66.1279976564314,61.7254922173802,85.8578940117029,96.4699640370863,65.5723665560108,45.1524628318973,24.1721890513108,27.8786560853665,13.9495531642878,0,0,0,0,0,0,35.2343472721246,10.1550699881588,1.34437519656986,14.1492689819771,17.4785398362642,15.4701627683233,0,0,0,0.338844532069132,0.889294796111139,4.04954872776629,9.88866362566974,4.9733608046227,1.49800055259202,1.92109152660777,0.311068836925433,0,0,0.285650984403804,0.220868540951614,0,0,0,0,0.127687338085188,0,0.131886287730194,0,0,0.279182999001381,0,0.45839474333043,0.294628585473668,0.569486723196412,0,5.07365495332333,6.49915416918356,199.716632715456,15.487629785665,0,0,0,1.34408066129201,7.02222100658759,2.55645483867087,3.63700406444016,2.82671659608272,0.704217098883403,42.3477375467249,45.8649431471962,21.3320010945999,4.97929394325792,6.08063677140237,4.04419556011827,12.5602267690966,85.7084394872138,5.64080128446334,0.346970653532272,0.913396434936424,0.461230994512117,1.3565037649736,3.99801604261396,2.26199864393416,12.6069433544531,18.074919614989,7.07688441559899,2.91180329905337,3.5334642953663,6.78825354389311,18.6391761218122,0.585561594023094,0.41889341362691,50.0695828208839,51.161058164028,36.5940665905979,45.6182115192302,0.149790639404823,0.457500602818626,0,0.347648640384553,1.27857728665165,0.20778804455956,0.324482526135515,4.9901288286655,7.34001126599549,2.77995034277042,3.57751155007006,0,0.459804208866946,0.180062129805349,0.30140963567143,0.408218994907967,0.2562274405697,0.187403449119458,1.55222022443409,0.431135985865684,0.189106080167819,0.351902248327898,0.43839146485515,0.834141747676794,2.78601733217733,5.96768195583036,0.398068533636986,33.004019803722,42.2050567668133,41.7720344111521,0.414251545071004,0.469052119962192,1.44049649168812,2.13070262026689,1.57411385397923,2.1597395804233,1.16266972375204,1.07309360559848,3.50296027101508,0.658239399653922,2.62667942526552,2.35099547682982,2.33919979880532,7.90380415047782,5.77087600669599,0.210289948564127,0.720332286654991,35.3548097792664,15.6025834331491,0.213288250535234,0.464473343720877,1.28867461322093,6.6555563125703,5.11469500843202,9.3210556795154,22.302865892592,16.3051965176771,22.368833583224,32.0319919986253,20.4712291475076,30.5598598942435,20.533114738096,25.6892242498134,0.569003702859245,2.28497025219458,2.25415471346161,3.86937522906097,2.71533482034676,5.47059395144485,3.41477300470989,2.95220295959204,3.61097074035162,2.96153193412321,3.55743152504579,0.83422552858047,0.393117990226406,0.899448449539415,0.405720242777006,1.92941727801933,1.78238096246994,3.74004978686054,3.24270453550071,1.64736847912849,14.3768206527355,6.32639611036456,3.43241440426017,5.30415643688935,2.51156378930677,0.964887042726734,18.8448253969937,0,0.162964976442026,0.339490171550376,0.234690248288502,1.84256883185997,2.85652369063216,3.31727201358258,3.78324345854858,3.98636441367795,3.18909537314974,8.84861899464985,9.67035898449015,11.8612228036839,101.030160239312,115.851910653385,19.1788066477424,11.313406598494,1.12385412991454,0.468846746368813,5.08198330667694,3.7870639080656,2.83957397474631,2.34263246577983,3.87762115919038,18.161628644394,20.0518806674155,15.5692091933858,12.5491317519217,14.3205370376543,13.4397844501818,0,7.09700426041343,0.712262414669021,5.04949573996086,23.5907275850726,5.30980553359851,0,0,0.754420319023592,0.590603785761546,2.76691633149535,7.23599220871019,1.09060118843252,0.356497378384721,2.52829406348653,2.10837217149998,4.12542172992747,1.02131881726136,0.36012218806262,0.129358683782755,0.643011105094777,1.06404140185364,0.713475270408282,0.658196082408484,0.304464949114599,13.1416156515678,7.41412248023371,2.42581237860458,16.488625294148,6.13564821444441,3.25689794612042,2.74556391207214,1.96969079694074,30.0225261728746,0.18542530201051,17.0870880797853,2.06386867963222,6.11141940320049,2.26042148405629,6.97140561377228,7.54967971581525,78.8699915171489,72.9147066606258,70.3437866664517,3.81868247206045,0.158167996790568,0.813277868507395,1.29606408986162,1.88179466413022,2.18362563746178,1.07891477107857,2.81021749466142,3.14107130380836,26.4414545515257,3.10669656543463,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0.168956125490778,1.99507305697782,0.5208175393758,0.314578033277133,0.241584120826006,0.864090018773596,6.00421129193539,1.21635129174099,3.18403967210964,5.3267537420896,4.65469408735452,4.76835251475036,4.80781798079875,4.28299628806274,3.83672509802961,4.80102881926499,4.53717833115782,4.77543615624787,6.63861707318273,5.96072201126002,4.53460767230423,0.443971906748129,0,0.335769232728157,12.9437028001568,25.5248166613607,46.5205125638853,20.5793643915903,3.51100472824754,0.564751842617067,0.460325236507177,0.572895513439397,1.20297227640581,0.685082519770642,0.755393897389701,0,0,0.906284817968409,0,0,0.399024873401031,0.682934423016537,0.972426868273176,0.838452650511929,0.367687016900028,2.889207461421,2.67845574410562,2.24643446714271,2.27427490587418,3.29523089857312,2.07488975524684,1.87283014939765,1.47257850531199,2.06767688240208,2.85776214769844,2.0859178670074,1.54327376370964,2.88460130562315,1.91358596174717,3.42869252385415,2.66213709239006,1.66905332963125,2.32554266611726,1.78807822789128,2.03075058940024,0.73171189149109,2.36762740294059,1.7654534799962,2.80571135828869,2.01679530811096,1.47756723563345,0.409231043169689,1.85924209423159,2.3148793317737,0.249810577937946,3.04111090979031,3.86767897286937,4.20834330551455,2.64709702943419,3.94175320554716 | |phase1_expression=0.480446541314382,136.79835979463,140.594764971367,26.3143863836942,15.5277676283368,77.5602236232931,106.760976752155,14.2035655785734,17.0354353803517,4.44722600011788,13.8686554262659,4.94587385771086,2.22560948910567,1.04904482902797,3.99731714178795,6.88415909125408,4.19737126876888,34.3853760240479,29.2053743580224,24.6145998042858,4.76242424845991,3.07801948722744,0.261199789138935,102.39515058778,116.310505501055,144.13222299287,133.105456813154,140.702714943886,97.6720376005762,54.438508028145,127.716774137456,0,0,0,26.285497397366,8.6442015586416,13.271008157054,66.1279976564314,61.7254922173802,85.8578940117029,96.4699640370863,65.5723665560108,45.1524628318973,24.1721890513108,27.8786560853665,13.9495531642878,0,0,0,0,0,0,35.2343472721246,10.1550699881588,1.34437519656986,14.1492689819771,17.4785398362642,15.4701627683233,0,0,0,0.338844532069132,0.889294796111139,4.04954872776629,9.88866362566974,4.9733608046227,1.49800055259202,1.92109152660777,0.311068836925433,0,0,0.285650984403804,0.220868540951614,0,0,0,0,0.127687338085188,0,0.131886287730194,0,0,0.279182999001381,0,0.45839474333043,0.294628585473668,0.569486723196412,0,5.07365495332333,6.49915416918356,199.716632715456,15.487629785665,0,0,0,1.34408066129201,7.02222100658759,2.55645483867087,3.63700406444016,2.82671659608272,0.704217098883403,42.3477375467249,45.8649431471962,21.3320010945999,4.97929394325792,6.08063677140237,4.04419556011827,12.5602267690966,85.7084394872138,5.64080128446334,0.346970653532272,0.913396434936424,0.461230994512117,1.3565037649736,3.99801604261396,2.26199864393416,12.6069433544531,18.074919614989,7.07688441559899,2.91180329905337,3.5334642953663,6.78825354389311,18.6391761218122,0.585561594023094,0.41889341362691,50.0695828208839,51.161058164028,36.5940665905979,45.6182115192302,0.149790639404823,0.457500602818626,0,0.347648640384553,1.27857728665165,0.20778804455956,0.324482526135515,4.9901288286655,7.34001126599549,2.77995034277042,3.57751155007006,0,0.459804208866946,0.180062129805349,0.30140963567143,0.408218994907967,0.2562274405697,0.187403449119458,1.55222022443409,0.431135985865684,0.189106080167819,0.351902248327898,0.43839146485515,0.834141747676794,2.78601733217733,5.96768195583036,0.398068533636986,33.004019803722,42.2050567668133,41.7720344111521,0.414251545071004,0.469052119962192,1.44049649168812,2.13070262026689,1.57411385397923,2.1597395804233,1.16266972375204,1.07309360559848,3.50296027101508,0.658239399653922,2.62667942526552,2.35099547682982,2.33919979880532,7.90380415047782,5.77087600669599,0.210289948564127,0.720332286654991,35.3548097792664,15.6025834331491,0.213288250535234,0.464473343720877,1.28867461322093,6.6555563125703,5.11469500843202,9.3210556795154,22.302865892592,16.3051965176771,22.368833583224,32.0319919986253,20.4712291475076,30.5598598942435,20.533114738096,25.6892242498134,0.569003702859245,2.28497025219458,2.25415471346161,3.86937522906097,2.71533482034676,5.47059395144485,3.41477300470989,2.95220295959204,3.61097074035162,2.96153193412321,3.55743152504579,0.83422552858047,0.393117990226406,0.899448449539415,0.405720242777006,1.92941727801933,1.78238096246994,3.74004978686054,3.24270453550071,1.64736847912849,14.3768206527355,6.32639611036456,3.43241440426017,5.30415643688935,2.51156378930677,0.964887042726734,18.8448253969937,0,0.162964976442026,0.339490171550376,0.234690248288502,1.84256883185997,2.85652369063216,3.31727201358258,3.78324345854858,3.98636441367795,3.18909537314974,8.84861899464985,9.67035898449015,11.8612228036839,101.030160239312,115.851910653385,19.1788066477424,11.313406598494,1.12385412991454,0.468846746368813,5.08198330667694,3.7870639080656,2.83957397474631,2.34263246577983,3.87762115919038,18.161628644394,20.0518806674155,15.5692091933858,12.5491317519217,14.3205370376543,13.4397844501818,0,7.09700426041343,0.712262414669021,5.04949573996086,23.5907275850726,5.30980553359851,0,0,0.754420319023592,0.590603785761546,2.76691633149535,7.23599220871019,1.09060118843252,0.356497378384721,2.52829406348653,2.10837217149998,4.12542172992747,1.02131881726136,0.36012218806262,0.129358683782755,0.643011105094777,1.06404140185364,0.713475270408282,0.658196082408484,0.304464949114599,13.1416156515678,7.41412248023371,2.42581237860458,16.488625294148,6.13564821444441,3.25689794612042,2.74556391207214,1.96969079694074,30.0225261728746,0.18542530201051,17.0870880797853,2.06386867963222,6.11141940320049,2.26042148405629,6.97140561377228,7.54967971581525,78.8699915171489,72.9147066606258,70.3437866664517,3.81868247206045,0.158167996790568,0.813277868507395,1.29606408986162,1.88179466413022,2.18362563746178,1.07891477107857,2.81021749466142,3.14107130380836,26.4414545515257,3.10669656543463,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0.168956125490778,1.99507305697782,0.5208175393758,0.314578033277133,0.241584120826006,0.864090018773596,6.00421129193539,1.21635129174099,3.18403967210964,5.3267537420896,4.65469408735452,4.76835251475036,4.80781798079875,4.28299628806274,3.83672509802961,4.80102881926499,4.53717833115782,4.77543615624787,6.63861707318273,5.96072201126002,4.53460767230423,0.443971906748129,0,0.335769232728157,12.9437028001568,25.5248166613607,46.5205125638853,20.5793643915903,3.51100472824754,0.564751842617067,0.460325236507177,0.572895513439397,1.20297227640581,0.685082519770642,0.755393897389701,0,0,0.906284817968409,0,0,0.399024873401031,0.682934423016537,0.972426868273176,0.838452650511929,0.367687016900028,2.889207461421,2.67845574410562,2.24643446714271,2.27427490587418,3.29523089857312,2.07488975524684,1.87283014939765,1.47257850531199,2.06767688240208,2.85776214769844,2.0859178670074,1.54327376370964,2.88460130562315,1.91358596174717,3.42869252385415,2.66213709239006,1.66905332963125,2.32554266611726,1.78807822789128,2.03075058940024,0.73171189149109,2.36762740294059,1.7654534799962,2.80571135828869,2.01679530811096,1.47756723563345,0.409231043169689,1.85924209423159,2.3148793317737,0.249810577937946,3.04111090979031,3.86767897286937,4.20834330551455,2.64709702943419,3.94175320554716 | ||
|short_description=p1@Casp4 | |short_description=p1@Casp4 | ||
}} | }} |
Latest revision as of 20:10, 26 September 2015
Short description: | p1@Casp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Casp4_5end |
Coexpression cluster: | MCL_coexpression_mm9:2684 |
Association with transcript: | 0bp_to_ENSMUST00000027012, ENSMUST00000152651, ENSMUST00000160064, ENSMUST00000160521, NM_007609, uc009obs.2, uc009obt.2, uc009obu.2_5end |
EntrezGene: | Casp4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.75e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 8.62e-11 | 31 |
endoderm-derived structure | 4.76e-10 | 118 |
endoderm | 4.76e-10 | 118 |
presumptive endoderm | 4.76e-10 | 118 |
organ component layer | 1.03e-09 | 24 |
digestive system | 1.47e-09 | 116 |
digestive tract | 1.47e-09 | 116 |
primitive gut | 1.47e-09 | 116 |
mucosa | 2.44e-09 | 15 |
hemolymphoid system | 5.81e-09 | 48 |
immune system | 5.81e-09 | 48 |
subdivision of digestive tract | 1.13e-08 | 114 |
gastrointestinal system | 1.59e-08 | 47 |
intestinal mucosa | 5.18e-08 | 13 |
wall of intestine | 5.18e-08 | 13 |
gastrointestinal system mucosa | 5.18e-08 | 13 |
hematopoietic system | 1.92e-07 | 45 |
blood island | 1.92e-07 | 45 |
musculoskeletal system | 3.32e-07 | 32 |
lateral plate mesoderm | 5.01e-07 | 87 |