FFCP PHASE1:Mm9::chr18:12662670..12662677,+: Difference between revisions
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|id=chr18:12662670..12662677,+
|short_description=p5@Lama3
|description=CAGE_peak_5_at_Lama3_5end
|association_with_transcript=-30bp_to_uc008ecg.1,uc008ech.1_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=16774 | |EntrezGene=16774 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3128 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UU65,Q61789 | |UniProt=Q3UU65,Q61789 | ||
|association_with_transcript=-30bp_to_uc008ecg.1,uc008ech.1_5end | |||
|cluster_id=chr18:12662670..12662677,+ | |||
|description=CAGE_peak_5_at_Lama3_5end | |||
|id=chr18:12662670..12662677,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,2.29e-17,3;CL:0002202,2.29e-17,3;CL:0000069,2.29e-17,3;CL:0002632,2.29e-17,3;CL:0002368,2.29e-17,3;CL:0000307,2.29e-17,3;CL:0000377,2.29e-17,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.47e-08!23;UBERON:0000014!2.34e-07!5;UBERON:0001003!2.34e-07!5;UBERON:0002097!2.34e-07!5;UBERON:0002199!2.34e-07!5;UBERON:0007029!2.34e-07!5;UBERON:0007376!2.34e-07!5;UBERON:0002416!2.34e-07!5;UBERON:0007383!2.34e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000014,7.48e-19,5;UBERON:0001003,7.48e-19,5;UBERON:0002097,7.48e-19,5;UBERON:0002199,7.48e-19,5;UBERON:0007029,7.48e-19,5;UBERON:0007376,7.48e-19,5;UBERON:0002416,7.48e-19,5;UBERON:0007383,7.48e-19,5;UBERON:0003126,2.29e-17,3;UBERON:0001005,2.29e-17,3;UBERON:0007196,2.29e-17,3;UBERON:0001558,2.29e-17,3;UBERON:0001962,2.02e-12,2;UBERON:0001961,2.02e-12,2;UBERON:0001744,2.02e-12,2;UBERON:0002465,1.42e-08,3;UBERON:0003199,3.59e-07,1 | |||
|phase1_expression=0,1.04692622291808,0.454999239389536,0,0.500895729946347,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,1.59992422793407,2.2940928106717,0,0,0.430942465371778,0.380046838912748,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5154372870785,1.26679932737549,2.02209778005913,0,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30140963567143,0,0.12811372028485,0,0.258703370739016,0,0,0.175951124163949,0.657587197282725,1.11218899690239,0.696504333044333,0.61734640922383,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605050573870028,0.22237804384487,0,0,0.164698954724011,0.754005626400808,0.596869416123452,1.75467678407208,0,0.216138049874694,0.597423819763102,0,0.114248512609729,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0.983528546038072,1.10374698521893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441056796109924,2.30840754118072,4.03661066739764,1.74907482291652,1.67121281604391,0.984845398470368,1.1659233465194,0,0,0.206386867963223,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0,0,0.209088296014469,0.87345025498471,0.404593039154462,1.23980183588004,0.26175594198403,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616265742988964,0.25984164595559,0.895133478337407,0.198681354781265,0.360586348559907,0,0.201932899896295,0.609654453239999,0,0.194915761479505,0,0.233753804363138,0.453460767230423,0.221985953374065,0,0,0.19318959403219,0,1.46521299413812,0.857473516316263,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.44449345560323,0,0.320919209591815,0.505394423527595,0,0,0.280924522409647,0.192075457214608,0.229741875822453,0.476293691283074,0.115884325944855,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.476872379894642,0.290692833264657,0,0.169229215783353,0.365855945745545,0.263069711437843,0,0.561142271657738,0,0,0,0.464810523557898,0.578719832943424,0.249810577937946,0,0.429742108096597,0.191288332068843,0,0 | |phase1_expression=0,1.04692622291808,0.454999239389536,0,0.500895729946347,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,1.59992422793407,2.2940928106717,0,0,0.430942465371778,0.380046838912748,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5154372870785,1.26679932737549,2.02209778005913,0,0,0,0,0,0,0,0,0,0.247194967734374,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30140963567143,0,0.12811372028485,0,0.258703370739016,0,0,0.175951124163949,0.657587197282725,1.11218899690239,0.696504333044333,0.61734640922383,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605050573870028,0.22237804384487,0,0,0.164698954724011,0.754005626400808,0.596869416123452,1.75467678407208,0,0.216138049874694,0.597423819763102,0,0.114248512609729,0,0,0,0,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0.221464689648775,0,0,0,0,0,0,0.983528546038072,1.10374698521893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441056796109924,2.30840754118072,4.03661066739764,1.74907482291652,1.67121281604391,0.984845398470368,1.1659233465194,0,0,0.206386867963223,0,0,0,0,0,0,0,0.954670618015114,0.158167996790568,0,0,0.209088296014469,0.87345025498471,0.404593039154462,1.23980183588004,0.26175594198403,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616265742988964,0.25984164595559,0.895133478337407,0.198681354781265,0.360586348559907,0,0.201932899896295,0.609654453239999,0,0.194915761479505,0,0.233753804363138,0.453460767230423,0.221985953374065,0,0,0.19318959403219,0,1.46521299413812,0.857473516316263,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0.44449345560323,0,0.320919209591815,0.505394423527595,0,0,0.280924522409647,0.192075457214608,0.229741875822453,0.476293691283074,0.115884325944855,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.476872379894642,0.290692833264657,0,0.169229215783353,0.365855945745545,0.263069711437843,0,0.561142271657738,0,0,0,0.464810523557898,0.578719832943424,0.249810577937946,0,0.429742108096597,0.191288332068843,0,0 | ||
|short_description=p5@Lama3 | |||
}} | }} |
Latest revision as of 01:35, 27 September 2015
Short description: | p5@Lama3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Lama3_5end |
Coexpression cluster: | MCL_coexpression_mm9:3128 |
Association with transcript: | -30bp_to_uc008ecg.1, uc008ech.1_5end |
EntrezGene: | Lama3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 2.29e-17 | 3 |
epithelial cell of tracheobronchial tree | 2.29e-17 | 3 |
branched duct epithelial cell | 2.29e-17 | 3 |
epithelial cell of lower respiratory tract | 2.29e-17 | 3 |
respiratory epithelial cell | 2.29e-17 | 3 |
tracheal epithelial cell | 2.29e-17 | 3 |
tracheoblast | 2.29e-17 | 3 |
Ontology term | p-value | n |
---|---|---|
zone of skin | 7.48e-19 | 5 |
skin epidermis | 7.48e-19 | 5 |
skin of body | 7.48e-19 | 5 |
integument | 7.48e-19 | 5 |
surface | 7.48e-19 | 5 |
outer epithelium | 7.48e-19 | 5 |
integumental system | 7.48e-19 | 5 |
enveloping layer of ectoderm | 7.48e-19 | 5 |
trachea | 2.29e-17 | 3 |
respiratory airway | 2.29e-17 | 3 |
tracheobronchial tree | 2.29e-17 | 3 |
lower respiratory tract | 2.29e-17 | 3 |
gut-associated lymphoid tissue | 2.02e-12 | 2 |
mucosa-associated lymphoid tissue | 2.02e-12 | 2 |
lymphoid tissue | 2.02e-12 | 2 |
lymphoid system | 1.42e-08 | 3 |
egg chamber | 3.59e-07 | 1 |