FFCP PHASE1:Mm9::chr1:34516601..34516659,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=19253|HGNC=|MCL_coexpression_id=297|UniProt=Q61152,Q3V441|association_with_transcript=10bp_to_ENSMUST00000027302,ENSMUST00000164433,NM_011206,uc007aos.1_5end|description=CAGE_peak_2_at_Ptpn18_5end|id=chr1:34516601..34516659,+|ontology_enrichment_celltype=CL:0002563!3.71e-07!9;CL:0002251!3.71e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,7.73e-08,9;CL:0002251,7.73e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!6.28e-21!59;UBERON:0000160!8.96e-19!43;UBERON:0001007!2.07e-15!128;UBERON:0001555!2.07e-15!128;UBERON:0007026!2.07e-15!128;UBERON:0004119!3.50e-15!130;UBERON:0000925!3.50e-15!130;UBERON:0006595!3.50e-15!130;UBERON:0004921!2.48e-14!126;UBERON:0004185!2.48e-14!126;UBERON:0000344!3.25e-10!15;UBERON:0001242!5.70e-09!13;UBERON:0000060!5.70e-09!13;UBERON:0001262!5.70e-09!13;UBERON:0004786!5.70e-09!13;UBERON:0002108!3.86e-08!16;UBERON:0004923!9.19e-08!24;UBERON:0003350!3.71e-07!9;UBERON:0004808!3.71e-07!9;UBERON:0001277!3.71e-07!9;UBERON:0001045!6.06e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0005409,7.67e-17,47;UBERON:0000160,2.58e-15,31;UBERON:0000344,2.90e-11,15;UBERON:0001007,2.65e-10,116;UBERON:0001555,2.65e-10,116;UBERON:0007026,2.65e-10,116;UBERON:0004119,5.53e-10,118;UBERON:0000925,5.53e-10,118;UBERON:0006595,5.53e-10,118;UBERON:0001242,7.20e-10,13;UBERON:0001262,7.20e-10,13;UBERON:0004786,7.20e-10,13;UBERON:0004921,2.31e-09,114;UBERON:0003350,7.73e-08,9;UBERON:0004808,7.73e-08,9;UBERON:0001277,7.73e-08,9;UBERON:0004923,1.64e-07,24;UBERON:0001264,4.64e-07,12|phase1_expression=0.640595388419176,34.1995899486574,35.0349414329943,35.3883127228991,33.0591181764589,53.385608467981,50.9275556498246,0.903863264091034,1.83025338797167,1.17032263160997,0.34243593645101,0.159544317990673,1.19840510951844,0.874204024189974,0.666219523631325,2.02475267389826,2.79824751251259,2.5236973228659,2.60517423850904,4.2438965179803,4.5072943780067,0.893618560807968,0.783599367416806,36.3182799741033,31.1996622251351,30.4342940980961,34.460959692726,37.9229369527165,11.7814520062952,14.1136872665561,29.0466968958449,6.98533740805594,3.69038872550742,0,33.5067878911479,25.6001353852078,35.1171292771275,20.0895182753716,10.1573594788094,17.2762835511353,27.6468799374577,24.589637458504,31.558172947025,0,0,0,0,0,0.219686182734472,0.58328969722285,0,0,1.51004345451963,2.17608642603403,0.672187598284928,0,0,0,0,0,0,0,0,2.2497492932035,0,3.5524005747305,1.19840044207362,0.384218305321555,0,0,0.210324961351382,0,0.220868540951614,0,0,0,1.10115880999389,0,0.153606533256243,0,0,0,0.279182999001381,0,0.15279824777681,0,0.142371680799103,0,0.227178579999552,0.0755715601067855,2.6087803983151,0,0.679971333707751,0,0.649776417447669,0,6.17955448579708,0,0,0,0.704217098883403,0,0,0,17.1027922398859,12.92135313923,13.6491600153991,5.82337786567206,4.91981978929626,0.593768556259299,0,0.304465478312141,0.230615497256059,0.753613202763113,0.23517741427141,0.502666365318702,0.741584903203122,5.49477556295664,4.42305275974937,2.10296904931632,3.5334642953663,1.93950101254089,20.5030937339934,0.292780797011547,1.46612694769419,21.7138496927303,0.958520996047362,0.599902730993408,0.127070227073065,0,0.457500602818626,0,0,0,0.62336413367868,0.162241263067758,1.2220723662038,2.86136032403214,0.505445516867349,15.5726973355991,0.130120442962704,0,0.360124259610698,0.150704817835715,0.272145996605311,0.384341160854549,0.374806898238915,7.24369438069244,0,0,0,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0.257347907114715,0.568326998791185,0.414251545071004,0.234526059981096,0.36012412292203,0.473489471170421,0,0.154267112887378,0.930135779001631,1.07309360559848,0.817357396570186,0.329119699826961,0.492502392237286,0.56748166682099,0.730999937126662,0.878200461164203,0.402619256281115,0.420579897128254,0,33.3722970813636,22.4782981664013,0,0,4.12375876230699,10.2858597557905,11.5636582799333,14.0766963323294,22.302865892592,13.3406153326449,18.3474702424197,18.3039954277859,19.6913727990311,13.4822911298133,20.3169766882213,29.8711909881551,0.569003702859245,1.48523066392647,5.63538678365402,4.48032921259691,4.46090720485539,7.01358198903186,12.2046516649817,18.5988786454299,17.583857518234,17.8925887686611,0.296452627087149,0.166845105716094,0,0.224862112384854,0.811440485554012,0.241177159752417,1.01850340712568,2.01387296215567,0.324270453550071,0.823684239564244,2.87536413054709,1.11642284300551,1.5601883655728,1.76805214562978,0.538192240565737,0.482443521363367,9.23765950833023,0.189491411770485,0.651859905768103,1.35796068620151,1.64283173801951,4.02015017860358,6.9032655856944,6.82967767502296,3.62560831444239,3.32197034473162,6.05928120898451,7.53771247692395,5.87128938344045,9.11289069063523,1.50791283939272,1.63171705145613,53.602305759075,35.5958402733105,0.160550589987792,0.117211686592203,0,1.00988370881749,0,0,0,0,0,0,0,0,0,0,3.40656204499845,2.67098405500883,3.25773918707152,8.57844639457184,31.8588332015911,2.42780636154981,8.46505959501303,15.2770114602277,13.5838870725155,21.213025208131,19.6405502807848,16.3590178264877,15.329387270543,27.495197940416,39.0048851727495,31.9720184069379,3.06395645178409,0.18006109403131,1.03486947026204,0.428674070063185,0.886701168211368,1.24858172321449,0.329098041204242,0.608929898229199,0.469343416127421,1.48282449604674,6.3953235435939,0.98931751764888,0.322928853391811,0.361877549568935,0.716234064018819,1.14898629821543,16.0314460146418,0,1.87957968877638,3.714963623338,0.925972636848558,1.69531611304222,1.77702496037333,1.60144721244566,11.728511669576,10.3564074719507,9.95039811391851,22.9120948323627,0.316335993581135,3.45643094115643,3.78018692876304,6.06356058441959,7.64268973111622,9.97996163247673,10.579642332843,24.0815466625307,45.6244705987111,49.0858057338671,0,0,0.165458490457098,0.388902376688095,0.258319646955462,0.337912250981556,0,0.781226309063701,0.419437377702843,0.241584120826006,0,0.316011120628178,1.21635129174099,1.33524244314275,1.03936658382236,0.716106782669926,1.19208812868759,0.961563596159751,1.77227432609493,1.51449674922221,1.5241361331,1.71404514732629,1.8516997340553,1.73181314952593,1.63627663054197,2.0405734525369,1.99787358036658,4.21655126064536,2.01461539636894,2.89784391048286,15.0145980360946,26.923288767288,4.07299920250225,15.5487352250963,0,0,0,0,0,0,0,0.900642406448441,0,0,0,0.399024873401031,0.170733605754134,0.486213434136588,0.628839487883947,0.735374033800057,2.889207461421,4.12070114477788,2.56735367673452,2.52697211763797,2.78827229879264,2.64076877940507,2.80924522409647,3.07320731543373,2.98664438569189,0.952587382566147,3.59241410429052,3.47236596834669,3.70877310722976,3.38557516309114,4.80016953339582,1.4198064492747,0.953744759789284,2.90692833264657,3.29382831453657,2.79228206042532,3.47563148458268,3.15683653725411,2.03706170768793,0.561142271657738,2.01679530811096,2.9551344712669,2.04615521584845,3.87342102964915,1.73615949883027,1.49886346762768,2.10538447600868,3.43793686477277,0.57386499620653,2.64709702943419,1.85494268496337|short_description=p2@Ptpn18}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=19253 | |||
|HGNC= | |||
|MCL_coexpression_id=297 | |||
|TSSclassifier=NA | |||
|UniProt=Q61152,Q3V441 | |||
|association_with_transcript=10bp_to_ENSMUST00000027302,ENSMUST00000164433,NM_011206,uc007aos.1_5end | |||
|cluster_id=chr1:34516601..34516659,+ | |||
|description=CAGE_peak_2_at_Ptpn18_5end | |||
|id=chr1:34516601..34516659,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.71e-07!9;CL:0002251!3.71e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.73e-08,9;CL:0002251,7.73e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!6.28e-21!59;UBERON:0000160!8.96e-19!43;UBERON:0001007!2.07e-15!128;UBERON:0001555!2.07e-15!128;UBERON:0007026!2.07e-15!128;UBERON:0004119!3.50e-15!130;UBERON:0000925!3.50e-15!130;UBERON:0006595!3.50e-15!130;UBERON:0004921!2.48e-14!126;UBERON:0004185!2.48e-14!126;UBERON:0000344!3.25e-10!15;UBERON:0001242!5.70e-09!13;UBERON:0000060!5.70e-09!13;UBERON:0001262!5.70e-09!13;UBERON:0004786!5.70e-09!13;UBERON:0002108!3.86e-08!16;UBERON:0004923!9.19e-08!24;UBERON:0003350!3.71e-07!9;UBERON:0004808!3.71e-07!9;UBERON:0001277!3.71e-07!9;UBERON:0001045!6.06e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,7.67e-17,47;UBERON:0000160,2.58e-15,31;UBERON:0000344,2.90e-11,15;UBERON:0001007,2.65e-10,116;UBERON:0001555,2.65e-10,116;UBERON:0007026,2.65e-10,116;UBERON:0004119,5.53e-10,118;UBERON:0000925,5.53e-10,118;UBERON:0006595,5.53e-10,118;UBERON:0001242,7.20e-10,13;UBERON:0001262,7.20e-10,13;UBERON:0004786,7.20e-10,13;UBERON:0004921,2.31e-09,114;UBERON:0003350,7.73e-08,9;UBERON:0004808,7.73e-08,9;UBERON:0001277,7.73e-08,9;UBERON:0004923,1.64e-07,24;UBERON:0001264,4.64e-07,12 | |||
|phase1_expression=0.640595388419176,34.1995899486574,35.0349414329943,35.3883127228991,33.0591181764589,53.385608467981,50.9275556498246,0.903863264091034,1.83025338797167,1.17032263160997,0.34243593645101,0.159544317990673,1.19840510951844,0.874204024189974,0.666219523631325,2.02475267389826,2.79824751251259,2.5236973228659,2.60517423850904,4.2438965179803,4.5072943780067,0.893618560807968,0.783599367416806,36.3182799741033,31.1996622251351,30.4342940980961,34.460959692726,37.9229369527165,11.7814520062952,14.1136872665561,29.0466968958449,6.98533740805594,3.69038872550742,0,33.5067878911479,25.6001353852078,35.1171292771275,20.0895182753716,10.1573594788094,17.2762835511353,27.6468799374577,24.589637458504,31.558172947025,0,0,0,0,0,0.219686182734472,0.58328969722285,0,0,1.51004345451963,2.17608642603403,0.672187598284928,0,0,0,0,0,0,0,0,2.2497492932035,0,3.5524005747305,1.19840044207362,0.384218305321555,0,0,0.210324961351382,0,0.220868540951614,0,0,0,1.10115880999389,0,0.153606533256243,0,0,0,0.279182999001381,0,0.15279824777681,0,0.142371680799103,0,0.227178579999552,0.0755715601067855,2.6087803983151,0,0.679971333707751,0,0.649776417447669,0,6.17955448579708,0,0,0,0.704217098883403,0,0,0,17.1027922398859,12.92135313923,13.6491600153991,5.82337786567206,4.91981978929626,0.593768556259299,0,0.304465478312141,0.230615497256059,0.753613202763113,0.23517741427141,0.502666365318702,0.741584903203122,5.49477556295664,4.42305275974937,2.10296904931632,3.5334642953663,1.93950101254089,20.5030937339934,0.292780797011547,1.46612694769419,21.7138496927303,0.958520996047362,0.599902730993408,0.127070227073065,0,0.457500602818626,0,0,0,0.62336413367868,0.162241263067758,1.2220723662038,2.86136032403214,0.505445516867349,15.5726973355991,0.130120442962704,0,0.360124259610698,0.150704817835715,0.272145996605311,0.384341160854549,0.374806898238915,7.24369438069244,0,0,0,0,0,0.348252166522167,0.205782136407943,0.199034266818493,0,0.257347907114715,0.568326998791185,0.414251545071004,0.234526059981096,0.36012412292203,0.473489471170421,0,0.154267112887378,0.930135779001631,1.07309360559848,0.817357396570186,0.329119699826961,0.492502392237286,0.56748166682099,0.730999937126662,0.878200461164203,0.402619256281115,0.420579897128254,0,33.3722970813636,22.4782981664013,0,0,4.12375876230699,10.2858597557905,11.5636582799333,14.0766963323294,22.302865892592,13.3406153326449,18.3474702424197,18.3039954277859,19.6913727990311,13.4822911298133,20.3169766882213,29.8711909881551,0.569003702859245,1.48523066392647,5.63538678365402,4.48032921259691,4.46090720485539,7.01358198903186,12.2046516649817,18.5988786454299,17.583857518234,17.8925887686611,0.296452627087149,0.166845105716094,0,0.224862112384854,0.811440485554012,0.241177159752417,1.01850340712568,2.01387296215567,0.324270453550071,0.823684239564244,2.87536413054709,1.11642284300551,1.5601883655728,1.76805214562978,0.538192240565737,0.482443521363367,9.23765950833023,0.189491411770485,0.651859905768103,1.35796068620151,1.64283173801951,4.02015017860358,6.9032655856944,6.82967767502296,3.62560831444239,3.32197034473162,6.05928120898451,7.53771247692395,5.87128938344045,9.11289069063523,1.50791283939272,1.63171705145613,53.602305759075,35.5958402733105,0.160550589987792,0.117211686592203,0,1.00988370881749,0,0,0,0,0,0,0,0,0,0,3.40656204499845,2.67098405500883,3.25773918707152,8.57844639457184,31.8588332015911,2.42780636154981,8.46505959501303,15.2770114602277,13.5838870725155,21.213025208131,19.6405502807848,16.3590178264877,15.329387270543,27.495197940416,39.0048851727495,31.9720184069379,3.06395645178409,0.18006109403131,1.03486947026204,0.428674070063185,0.886701168211368,1.24858172321449,0.329098041204242,0.608929898229199,0.469343416127421,1.48282449604674,6.3953235435939,0.98931751764888,0.322928853391811,0.361877549568935,0.716234064018819,1.14898629821543,16.0314460146418,0,1.87957968877638,3.714963623338,0.925972636848558,1.69531611304222,1.77702496037333,1.60144721244566,11.728511669576,10.3564074719507,9.95039811391851,22.9120948323627,0.316335993581135,3.45643094115643,3.78018692876304,6.06356058441959,7.64268973111622,9.97996163247673,10.579642332843,24.0815466625307,45.6244705987111,49.0858057338671,0,0,0.165458490457098,0.388902376688095,0.258319646955462,0.337912250981556,0,0.781226309063701,0.419437377702843,0.241584120826006,0,0.316011120628178,1.21635129174099,1.33524244314275,1.03936658382236,0.716106782669926,1.19208812868759,0.961563596159751,1.77227432609493,1.51449674922221,1.5241361331,1.71404514732629,1.8516997340553,1.73181314952593,1.63627663054197,2.0405734525369,1.99787358036658,4.21655126064536,2.01461539636894,2.89784391048286,15.0145980360946,26.923288767288,4.07299920250225,15.5487352250963,0,0,0,0,0,0,0,0.900642406448441,0,0,0,0.399024873401031,0.170733605754134,0.486213434136588,0.628839487883947,0.735374033800057,2.889207461421,4.12070114477788,2.56735367673452,2.52697211763797,2.78827229879264,2.64076877940507,2.80924522409647,3.07320731543373,2.98664438569189,0.952587382566147,3.59241410429052,3.47236596834669,3.70877310722976,3.38557516309114,4.80016953339582,1.4198064492747,0.953744759789284,2.90692833264657,3.29382831453657,2.79228206042532,3.47563148458268,3.15683653725411,2.03706170768793,0.561142271657738,2.01679530811096,2.9551344712669,2.04615521584845,3.87342102964915,1.73615949883027,1.49886346762768,2.10538447600868,3.43793686477277,0.57386499620653,2.64709702943419,1.85494268496337 | |||
|short_description=p2@Ptpn18 | |||
}} |
Latest revision as of 01:59, 27 September 2015
Short description: | p2@Ptpn18 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ptpn18_5end |
Coexpression cluster: | MCL_coexpression_mm9:297 |
Association with transcript: | 10bp_to_ENSMUST00000027302, ENSMUST00000164433, NM_011206, uc007aos.1_5end |
EntrezGene: | Ptpn18 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.73e-08 | 9 |
epithelial cell of alimentary canal | 7.73e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 7.67e-17 | 47 |
intestine | 2.58e-15 | 31 |
mucosa | 2.90e-11 | 15 |
digestive system | 2.65e-10 | 116 |
digestive tract | 2.65e-10 | 116 |
primitive gut | 2.65e-10 | 116 |
endoderm-derived structure | 5.53e-10 | 118 |
endoderm | 5.53e-10 | 118 |
presumptive endoderm | 5.53e-10 | 118 |
intestinal mucosa | 7.20e-10 | 13 |
wall of intestine | 7.20e-10 | 13 |
gastrointestinal system mucosa | 7.20e-10 | 13 |
subdivision of digestive tract | 2.31e-09 | 114 |
epithelium of mucosa | 7.73e-08 | 9 |
gastrointestinal system epithelium | 7.73e-08 | 9 |
intestinal epithelium | 7.73e-08 | 9 |
organ component layer | 1.64e-07 | 24 |
pancreas | 4.64e-07 | 12 |