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FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in [http://fantom.gsc.riken.jp/5/ the FANTOM5 project]. If you have any questions or comments, please contact to fantom@ | FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in [http://fantom.gsc.riken.jp/5/ the FANTOM5 project]. If you have any questions or comments, please contact to fantom-help@riken.jp | ||
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== Contacts == | == Contacts == | ||
[mailto:fantom-help@ | [mailto:fantom-help@riken.jp?Subject=Fantom5%20WebSite%20Subject&body= help] | ||
Revision as of 10:29, 20 April 2017
FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project. If you have any questions or comments, please contact to fantom-help@riken.jp
| Search genes | |||
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| Examples | Browse | ||
| Time courses | Promoters and enhancers activity in 19 human and 14 mouse time courses covering a wide range of cell types and biological stimuli | ||
| Samples | Details of profiled samples (incl. primary cells, cell lines, and tissues) | ||
| Sample classifications |
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology (FF), consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). |
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| Co-expression |
CAGE peaks (TSS regions) are grouped based on expression, by using MCL |
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| Motifs |
known and de-novo motifs discovered in the proximal region to the CAGE peaks |
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| Transcription factors |
Transcription factors. |
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