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Template:Novel motif: Difference between revisions

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}
}


    $('#h_pval_table').DataTable({
dom: 'lfrtip',
scrollY: "300px",
scrollCollapse: true,
searching: true,
        pLength: 10,
lengthMenu: [[5,10,-1], [5,10,"All"]],
data: h_data,
        columnDefs: [
          { targets: 0, orderable: false},
          { targets: 1, width: "50pt"}
        ],
columns: [
{ title: "FF samples", render: function(data, type, row, meta) {
return '<a href="/5/sstar/index.php/FF:'+row[ 0 ].split('.').pop()+'">'+decodeURIComponent(row[ 0 ])+'</a>';
} },
{ title: "p-value",  type: "numeric", render: function (data, type, row, meta) {                   
        var num = row[1];
          return exp_converter(num,2,"e") ;
} }
],
order: [[ 1, "asc" ]],
});




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});
});


// GREAT table for human start
// GREAT table for human/mouse start
$('#great_table_human').DataTable({
$('#great_table_human, #great_table_mouse').DataTable({
dom: 'lfrtip',
dom: 'lfrtip',
scrollY: "300px",
scrollY: "300px",
scrollCollapse: true,
scrollCollapse: true,
     pageLength: 10,
     pageLength: 10,
    lengthMenu: [[5,10,-1], [5,10,"All"]],
order: [[ 2, "asc" ]],
columnDefs: [
{ targets: 0, orderable: false },
{ targets: 1, orderable: false },
{ targets: 2, type: "html-number", width: "80pt" }
],
columns: [
{title: ""},
{title: ""},
{title: "FF samples", render: function(data, type, row, meta) {
              var num =row[1];
              return exp_converter(num,2,"e") ;
}
}
]
});
// GREAT table for human end
// GREAT table for mouse start
$('#great_table_mouse').DataTable({
dom: 'lfrtip',
scrollY: "300px",
scrollCollapse: true,
     lengthMenu: [[5,10,-1], [5,10,"All"]],
     lengthMenu: [[5,10,-1], [5,10,"All"]],
order: [[ 2, "asc" ]],
order: [[ 2, "asc" ]],
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]
]
});
});
// GREAT table for mouse end
// GREAT table for human/mouse end
});
});
</script>
</script>

Revision as of 14:57, 17 January 2020

name:{{{name}}}

Association to promoter expression in human samples<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data



Association to promoter expression in mouse samples <b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data



GREAT analysis results for human <b>Summary:</b>Genomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon<br><br>link to source dataset <br>data



GREAT analysis results for mouseGenomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon <br><br>link to source dataset <br>data

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