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{{f5samples
{{f5samples
|DRA_sample_Accession=dog_CAGE@SAMD00053777
|DRA_sample_Accession_Zoo=dog_sRNA@SAMD00053777
|accession_numbers=dog_CAGE;DRX057299;DRR063058;DRZ007585;DRZ007598
|accession_numbers_Zoo=dog_sRNA;DRX163590;DRR172979;DRZ014426!dog_sRNA;DRX163591;DRR172980;DRZ014427!dog_sRNA;DRX163592;DRR172981;DRZ014428
|ancestors_in_anatomy_facet=UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|sample_note=
|sample_note=
|sample_sex=mixed
|sample_sex=mixed
|sample_species=Dog (Canis lupus familaris)
|sample_species=Canis lupus familaris
|sample_strain=Beagle
|sample_strain=Beagle
|sample_tissue=unclassifiable
|sample_tissue=unclassifiable
|top_motifs=
|top_motifs=
|xref=
|xref=
|zenbu_config=http://fantom.gsc.riken.jp/zenbu/gLyphs/#config=4z61KhduJdFmBsHnv6C65D
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_dog;search_select_hide=table111:FF:10006-101B2;search_select_hide=table117:FF:10006-101B2
|zoo_library_id=SRhi10007.GGCTAC!SRhi10008.GGTAGC!SRhi10011.GTCCGC
}}
}}

Latest revision as of 09:37, 5 June 2020


Name:Universal RNA - Dog Normal Tissues Biochain, pool1
Species:Canis lupus familaris
Library ID:CNhs10590
Sample type:tissues
ZENBU report :link
Additional information
Sample information
strainBeagle
tissueunclassifiable
dev stage1.5 years adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB205003
catalog numberCat:R4734565-1
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
dog_CAGE  SAMD00053777
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10590 dog_CAGE DRX057299 DRR063058
Accession ID

Library idBAMCTSS
CNhs10590 DRZ007585 DRZ007598

sRNA Accession numbers
MethodSample accession id
dog_sRNA  SAMD00053777
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.GGCTAC dog_sRNA DRX163590 DRR172979
SRhi10008.GGTAGC dog_sRNA DRX163591 DRR172980
SRhi10011.GTCCGC dog_sRNA DRX163592 DRR172981
Accession ID

Library idBAMCTSS
SRhi10007.GGCTAC DRZ014426
SRhi10008.GGTAGC DRZ014427
SRhi10011.GTCCGC DRZ014428



FANTOM5 (FF) ontology

Direct parent terms

has_quality relathionship
PATO:0000461

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000016 (canine sample)
0000001 (sample)
0000004 (tissue sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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