Personal tools

Template:JASPAR motif: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
(Undo revision 4578711 by A-Kondo (talk))
Tag: Undo
 
(40 intermediate revisions by 2 users not shown)
Line 1: Line 1:
<html>
<html>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/5/sstar/rb_js/html5button/datatables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
 
.content, .sidebar
{
display: inline-block;
      border:0px solid #a1a1a1;
      padding:5px 10px;
      border-radius:10px;
      background:#FEFEFE;
}
table.details td { width:30%; background-color: #EAEBFF;}
table.details th { width:10%; background-color: #5A5FB5; color: white;}
</style>
</style>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.js"></script>
<script type="text/javascript" src="/5/sstar/rb_js/custom/convert.js"></script>
</script>




Line 20: Line 32:
}
}


     $('#h_pval_table').dataTable({
     $('#h_pval_table').DataTable({
"sScrollY": "300px",
dom: 'Blfrtip',
"bScrollCollapse": true,
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
"bPaginate": false,
scrollY: "300px",
"bFilter": false,
scrollCollapse: true,
"bInfo": false,
searching: true,
"aaData": h_data,
        pageLength: 10,
"aoColumns": [{ "sTitle": "FF samples", "bSortable": false, "fnRender": function(obj) {
        lengthMenu: [[5,10,-1], [5,10,"All"]],
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
data: h_data,
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
        columnDefs: [
"aaSorting": [[ 1, "asc" ]],
          { targets: 0, orderable: false},
          { targets: 1, width: "50pt"}
        ],
columns: [
{ title: "FF samples", render: function(data, type, row, meta) {
return '<a href="/5/sstar/index.php/FF:'+row[ 0 ].split('.').pop()+'">'+decodeURIComponent(row[ 0 ])+'</a>';
} },
{ title: "p-value",  type: "numeric", render: function (data, type, row, meta) {
                  var num =row[1];
                  return exp_converter(num,2,"e");
} }
],
order: [[ 1, "asc" ]],
});
});


Line 43: Line 67:
}
}


     $('#m_pval_table').dataTable({
     $('#m_pval_table').DataTable({
"sScrollY": "300px",
dom: 'Blfrtip',
"bScrollCollapse": true,
buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
"bPaginate": false,
scrollY: "300px",
"bFilter": false,
scrollCollapse: true,
"bInfo": false,
        pLength: 10,
"aaData": m_data,
        lengthMenu: [[5,10,-1], [5,10,"All"]],
"aoColumns": [{ "sTitle": "FF samples", "bSortable": false, "fnRender": function(obj) {
data: m_data,
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
        columnDefs: [
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
          { targets: 0, orderable: false},
"aaSorting": [[ 1, "asc" ]],
          { targets: 1, width: "50pt"}
});
        ],
columns: [{title: "FF samples", render: function(data, type, row, meta) {
return '<a href="/5/sstar/index.php/FF:'+row[ 0 ].split('.').pop()+'">'+decodeURIComponent(row[ 0 ])+'</a>';
} },
{ title: "p-value",  type: "numeric", render: function (data, type, row, meta) {
              var num =row[1];
              return exp_converter(num,2,"e");
}}],
order: [[ 1, "asc" ]],
});
});
});
</script>
</script>
</html>
</html>
*name: [[name::{{{name}}}]]
<html>
== P-values for the human samples ==
<div class="container">
{{#info:<br>Analyst: Michiel de Hoon}}
  <div class="content">
    <table class="details">
      <tr><th scope="row" align="right">JASPAR ID:</th><td></html>{{PAGENAME}}<html></td></tr>
      <tr><th scope="row" align="right">name:</th><td></html>{{#arraymap:{{{name}}}|::|$|{{#set:name=$}}{{#ask:[[Category:EntrezGene]][[symbol::~$]]|?symbol|?description|?GeneID|?Tax id|link=none|format=template|template=JASPAR_motif_relatedgene}}|}}<html></td></tr>
<tr><th scope="row" align="right">xref:</th><td></html>[http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID={{PAGENAME}}&rm=present&collection=CORE Jaspar Database]<html></td></tr>
    </table>
    </div>
  <div class="content">
          <img src="/5/sstar/seqlogo/jaspar/</html>{{PAGENAME}}<html>.png" width ="200" height = "100">
  </div>


<table id="h_pval_table"></table>
</div></html>
{{Fontsize|3| Association to promoter expression in human samples}}{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon
<br><br>
link to source dataset <br>
[//fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt data]
}}
----
<table id="h_pval_table" class="ff_sample_list stripe cell-border order-column compact dataTable no-footer"></table>
<br><br><br>


== P-values for the mouse samples ==
{{Fontsize|3|Association to promoter expression in mouse samples}}
{{#info:<br>Analyst: Michiel de Hoon}}
{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon
 
<br><br>
<table id="m_pval_table"></table>
link to source dataset <br>
[//fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt data]
}}
----
<table id="m_pval_table" class="ff_sample_list stripe cell-border order-column compact dataTable no-footer"></table>




Line 77: Line 131:
{{#arraymap:{{{jaspar_motifs_human_sample_pval}}}|,|$
{{#arraymap:{{{jaspar_motifs_human_sample_pval}}}|,|$
|{{#set:jaspar_motifs_sample_pval=$}}
|{{#set:jaspar_motifs_sample_pval=$}}
}}
{{#arraymap:{{{jaspar_motifs_human_sample_pval}}}|,|$
|{{#set:jaspar_motifs_sample_human_pval={{#explode:$|;|0}}}}
}}
{{#arraymap:{{{jaspar_motifs_mouse_sample_pval}}}|,|$
|{{#set:jaspar_motifs_sample_mouse_pval={{#explode:$|;|0}} }}
}}
}}




[[Category:JASPAR_motif]]
[[Category:JASPAR_motif]]
[[Category:Motif]]

Latest revision as of 16:23, 24 September 2021

JASPAR ID:JASPAR motif
name:
xref:motif&rm=present&collection=CORE Jaspar Database

Association to promoter expression in human samples<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data




Association to promoter expression in mouse samples <b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Template:JASPAR_motif&oldid=4578771"