FFCP PHASE1:Mm9::chr2:131000557..131000573,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=70997 | |EntrezGene=70997 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=346 | |||
|TSSclassifier=NA | |||
|UniProt=Q99JL1 | |UniProt=Q99JL1 | ||
|association_with_transcript=-11bp_to_NM_027641,uc008mkv.1_5end | |association_with_transcript=-11bp_to_NM_027641,uc008mkv.1_5end | ||
|cluster_id=chr2:131000557..131000573,- | |||
|description=CAGE_peak_1_at_Spef1_5end | |description=CAGE_peak_1_at_Spef1_5end | ||
|id=chr2:131000557..131000573,- | |id=chr2:131000557..131000573,- | ||
|ontology_enrichment_celltype=CL:0000221!3.38e-08!44;CL:0000133!3.38e-08!44;CL:0002319!1.10e-07!43;CL:0000117!1.84e-07!23;CL:0000337!1.84e-07!23 | |ontology_enrichment_celltype=CL:0000221!3.38e-08!44;CL:0000133!3.38e-08!44;CL:0002319!1.10e-07!43;CL:0000117!1.84e-07!23;CL:0000337!1.84e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000878,3.35e-09,2;CL:0000129,3.35e-09,2;CL:0002605,8.16e-09,2;CL:0002604,8.16e-09,2;CL:0002319,1.22e-08,43;CL:0000221,2.11e-08,44;CL:0000133,2.11e-08,44;CL:0002453,3.23e-08,8;CL:0002611,3.52e-08,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.23e-16!73;UBERON:0005743!7.23e-16!73;UBERON:0000073!4.89e-15!75;UBERON:0001016!4.89e-15!75;UBERON:0001049!4.62e-14!52;UBERON:0005068!4.62e-14!52;UBERON:0006241!4.62e-14!52;UBERON:0007135!4.62e-14!52;UBERON:0004121!3.69e-12!102;UBERON:0000924!3.69e-12!102;UBERON:0006601!3.69e-12!102;UBERON:0000033!1.34e-11!63;UBERON:0002346!1.61e-11!71;UBERON:0003075!1.61e-11!71;UBERON:0007284!1.61e-11!71;UBERON:0002616!7.57e-11!49;UBERON:0000955!1.97e-10!50;UBERON:0006238!1.97e-10!50;UBERON:0003056!3.55e-10!49;UBERON:0002020!4.30e-10!34;UBERON:0003080!1.18e-09!40;UBERON:0002780!5.92e-09!39;UBERON:0001890!5.92e-09!39;UBERON:0006240!5.92e-09!39;UBERON:0000025!6.93e-08!114;UBERON:0004111!1.12e-07!122 | |ontology_enrichment_uberon=UBERON:0001017!7.23e-16!73;UBERON:0005743!7.23e-16!73;UBERON:0000073!4.89e-15!75;UBERON:0001016!4.89e-15!75;UBERON:0001049!4.62e-14!52;UBERON:0005068!4.62e-14!52;UBERON:0006241!4.62e-14!52;UBERON:0007135!4.62e-14!52;UBERON:0004121!3.69e-12!102;UBERON:0000924!3.69e-12!102;UBERON:0006601!3.69e-12!102;UBERON:0000033!1.34e-11!63;UBERON:0002346!1.61e-11!71;UBERON:0003075!1.61e-11!71;UBERON:0007284!1.61e-11!71;UBERON:0002616!7.57e-11!49;UBERON:0000955!1.97e-10!50;UBERON:0006238!1.97e-10!50;UBERON:0003056!3.55e-10!49;UBERON:0002020!4.30e-10!34;UBERON:0003080!1.18e-09!40;UBERON:0002780!5.92e-09!39;UBERON:0001890!5.92e-09!39;UBERON:0006240!5.92e-09!39;UBERON:0000025!6.93e-08!114;UBERON:0004111!1.12e-07!122 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,8.81e-12,5;UBERON:0002315,8.81e-12,5;UBERON:0002020,5.21e-11,34;UBERON:0001017,4.62e-10,73;UBERON:0002240,7.64e-10,6;UBERON:0005174,7.64e-10,6;UBERON:0001137,7.64e-10,6;UBERON:0001016,1.03e-09,75;UBERON:0001049,1.86e-09,52;UBERON:0005068,1.86e-09,52;UBERON:0006241,1.86e-09,52;UBERON:0007135,1.86e-09,52;UBERON:0000073,5.09e-09,54;UBERON:0002346,1.37e-08,64;UBERON:0003075,1.37e-08,64;UBERON:0007284,1.37e-08,64;UBERON:0010371,1.61e-08,73;UBERON:0002950,2.51e-08,4;UBERON:0001891,2.51e-08,4;UBERON:0009616,2.51e-08,4;UBERON:0010286,2.51e-08,4;UBERON:0002256,3.52e-08,2;UBERON:0004121,3.57e-08,95;UBERON:0000924,3.57e-08,95;UBERON:0006601,3.57e-08,95 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48677489619386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,1.75748946187577,1.94429899074283,0.699932108126813,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,0.633831403506179,0,0.889294796111139,0,0,0,4.19440154725767,26.1268447618657,0,0,0,1.71390590642282,1.10434270475807,0,0,0,0,0.893811366596314,0.614426133024974,0.131886287730194,0.457438218012048,0.52091337055676,0.279182999001381,1.12552522006336,1.06958773443767,1.47314292736834,1.13897344639282,0.745597783301202,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0.35333957451034,0.563373679106722,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,1.19832511523858,0.457500602818626,0,0.173824320192276,0,1.66230435647648,0.486723789203273,0,0.124406970610093,0.252722758433675,0.210441855886474,0,0,0,0,0.0680364991513279,0.12811372028485,0.374806898238915,1.55222022443409,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.210289948564127,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,1.66277871149944,0,0.162964976442026,0,0.704070744865506,0.167506257441816,0.476087281772027,0.975668239288994,0.788175720530955,0,0.318909537314974,0.655453258862952,0.690739927463582,1.44649058581512,0,0,0,0,0.80275294993896,0,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,1.13552068166615,0,0,0.824850614862677,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0.356737635204141,0.658196082408484,0.608929898229199,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2197093444731,0,0,0.388902376688095,0,0.168956125490778,0,0,0.104859344425711,8.93861247056222,12.0972602628303,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0.0974578807397524,0,0,0,0,0.179427713218951,0.167884616364078,0,0,0,0,0,0,0,1.14579102687879,1.3748254587495,1.37016503954128,0,0.675022500231806,0.900642406448441,0.906284817968409,0,0,0,0,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0.187283014939765,0.0640251524048693,0.114870937911227,0.476293691283074,0.115884325944855,0,0,0.294397840268795,0.685738504770831,0.177475806159338,0.238436189947321,0,0.188218760830661,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0,0.499621155875892,0.233931608445408,0,0,0,0 | |phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48677489619386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872100625521786,1.75748946187577,1.94429899074283,0.699932108126813,0,0,0,0,0,0,0,0.404632921719196,0.528990979272033,0.633831403506179,0,0.889294796111139,0,0,0,4.19440154725767,26.1268447618657,0,0,0,1.71390590642282,1.10434270475807,0,0,0,0,0.893811366596314,0.614426133024974,0.131886287730194,0.457438218012048,0.52091337055676,0.279182999001381,1.12552522006336,1.06958773443767,1.47314292736834,1.13897344639282,0.745597783301202,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0.35333957451034,0.563373679106722,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,1.19832511523858,0.457500602818626,0,0.173824320192276,0,1.66230435647648,0.486723789203273,0,0.124406970610093,0.252722758433675,0.210441855886474,0,0,0,0,0.0680364991513279,0.12811372028485,0.374806898238915,1.55222022443409,0,0,0,0,0,0,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146199987425332,0,0,0.210289948564127,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,1.66277871149944,0,0.162964976442026,0,0.704070744865506,0.167506257441816,0.476087281772027,0.975668239288994,0.788175720530955,0,0.318909537314974,0.655453258862952,0.690739927463582,1.44649058581512,0,0,0,0,0.80275294993896,0,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,1.13552068166615,0,0,0.824850614862677,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0.356737635204141,0.658196082408484,0.608929898229199,0,0,0,0.16488625294148,0,0.0603129249281559,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2197093444731,0,0,0.388902376688095,0,0.168956125490778,0,0,0.104859344425711,8.93861247056222,12.0972602628303,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0.0974578807397524,0,0,0,0,0.179427713218951,0.167884616364078,0,0,0,0,0,0,0,1.14579102687879,1.3748254587495,1.37016503954128,0,0.675022500231806,0.900642406448441,0.906284817968409,0,0,0,0,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0.187283014939765,0.0640251524048693,0.114870937911227,0.476293691283074,0.115884325944855,0,0,0.294397840268795,0.685738504770831,0.177475806159338,0.238436189947321,0,0.188218760830661,0,0,0,0,0,0.118635018124174,0.0985044823755635,0,0,0,0.499621155875892,0.233931608445408,0,0,0,0 | ||
|short_description=p1@Spef1 | |short_description=p1@Spef1 | ||
}} | }} |
Latest revision as of 18:13, 25 September 2015
Short description: | p1@Spef1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spef1_5end |
Coexpression cluster: | MCL_coexpression_mm9:346 |
Association with transcript: | -11bp_to_NM_027641, uc008mkv.1_5end |
EntrezGene: | Spef1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system macrophage | 3.35e-09 | 2 |
microglial cell | 3.35e-09 | 2 |
astrocyte of the cerebral cortex | 8.16e-09 | 2 |
astrocyte of the hippocampus | 8.16e-09 | 2 |
neural cell | 1.22e-08 | 43 |
ectodermal cell | 2.11e-08 | 44 |
neurectodermal cell | 2.11e-08 | 44 |
oligodendrocyte precursor cell | 3.23e-08 | 8 |
neuron of the dorsal spinal cord | 3.52e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 8.81e-12 | 5 |
gray matter of spinal cord | 8.81e-12 | 5 |
gray matter | 5.21e-11 | 34 |
central nervous system | 4.62e-10 | 73 |
spinal cord | 7.64e-10 | 6 |
dorsal region element | 7.64e-10 | 6 |
dorsum | 7.64e-10 | 6 |
nervous system | 1.03e-09 | 75 |
neural tube | 1.86e-09 | 52 |
neural rod | 1.86e-09 | 52 |
future spinal cord | 1.86e-09 | 52 |
neural keel | 1.86e-09 | 52 |
regional part of nervous system | 5.09e-09 | 54 |
neurectoderm | 1.37e-08 | 64 |
neural plate | 1.37e-08 | 64 |
presumptive neural plate | 1.37e-08 | 64 |
ecto-epithelium | 1.61e-08 | 73 |
regional part of midbrain | 2.51e-08 | 4 |
midbrain | 2.51e-08 | 4 |
presumptive midbrain | 2.51e-08 | 4 |
midbrain neural tube | 2.51e-08 | 4 |
dorsal horn of spinal cord | 3.52e-08 | 2 |
ectoderm-derived structure | 3.57e-08 | 95 |
ectoderm | 3.57e-08 | 95 |
presumptive ectoderm | 3.57e-08 | 95 |