FFCP PHASE1:Mm9::chr3:127492189..127492205,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1278 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:127492189..127492205,+ | |||
|description=CAGE_peak_at_chr3:127492189..127492205,+ | |description=CAGE_peak_at_chr3:127492189..127492205,+ | ||
|id=chr3:127492189..127492205,+ | |id=chr3:127492189..127492205,+ | ||
|ontology_enrichment_celltype=CL:0002563!4.22e-11!9;CL:0002251!4.22e-11!9;CL:0000066!3.63e-08!25;CL:0000239!1.05e-07!6;CL:0000677!1.05e-07!6;CL:0000212!1.05e-07!6;CL:0000584!1.05e-07!6 | |ontology_enrichment_celltype=CL:0002563!4.22e-11!9;CL:0002251!4.22e-11!9;CL:0000066!3.63e-08!25;CL:0000239!1.05e-07!6;CL:0000677!1.05e-07!6;CL:0000212!1.05e-07!6;CL:0000584!1.05e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,8.45e-21,9;CL:0002251,8.45e-21,9;CL:0000066,5.07e-14,25;CL:0000239,5.96e-14,6;CL:0000677,5.96e-14,6;CL:0000584,5.96e-14,6;CL:0000075,7.42e-12,7;CL:0002076,9.08e-12,15;CL:0000223,3.04e-10,20;CL:0000682,9.95e-09,3;CL:0002250,1.96e-08,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.82e-18!43;UBERON:0000344!2.80e-17!15;UBERON:0001242!1.99e-15!13;UBERON:0000060!1.99e-15!13;UBERON:0001262!1.99e-15!13;UBERON:0004786!1.99e-15!13;UBERON:0005409!2.11e-12!59;UBERON:0003350!4.22e-11!9;UBERON:0004808!4.22e-11!9;UBERON:0001277!4.22e-11!9;UBERON:0004923!7.60e-09!24;UBERON:0000485!1.41e-08!11 | |ontology_enrichment_uberon=UBERON:0000160!2.82e-18!43;UBERON:0000344!2.80e-17!15;UBERON:0001242!1.99e-15!13;UBERON:0000060!1.99e-15!13;UBERON:0001262!1.99e-15!13;UBERON:0004786!1.99e-15!13;UBERON:0005409!2.11e-12!59;UBERON:0003350!4.22e-11!9;UBERON:0004808!4.22e-11!9;UBERON:0001277!4.22e-11!9;UBERON:0004923!7.60e-09!24;UBERON:0000485!1.41e-08!11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.51e-59,31;UBERON:0005409,7.27e-40,47;UBERON:0000344,2.59e-33,15;UBERON:0001242,1.47e-29,13;UBERON:0001262,1.47e-29,13;UBERON:0004786,1.47e-29,13;UBERON:0003350,8.45e-21,9;UBERON:0004808,8.45e-21,9;UBERON:0001277,8.45e-21,9;UBERON:0004923,1.83e-19,24;UBERON:0000485,1.08e-16,11;UBERON:0001007,1.70e-15,116;UBERON:0001555,1.70e-15,116;UBERON:0007026,1.70e-15,116;UBERON:0004119,4.12e-15,118;UBERON:0000925,4.12e-15,118;UBERON:0006595,4.12e-15,118;UBERON:0004921,1.60e-13,114;UBERON:0002108,1.34e-10,4;UBERON:0000331,1.57e-08,3;UBERON:0002116,1.57e-08,3;UBERON:0001204,1.57e-08,3;UBERON:0001168,1.57e-08,3;UBERON:0002465,7.12e-07,3 | |||
|phase1_expression=0,20.9385244583617,28.2099528421512,3.0246421130683,2.00358291978539,4.53274034162102,5.13947809310157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91990907352088,3.89995777814189,21.8208146363708,17.6612418425221,18.7459972436723,30.4037471130198,7.81293402255785,15.5211357458713,0,0,0,18.1976520443303,14.7948834369058,15.5168710759401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0.383062014255563,0,0,0.0914876436024097,0,0,0,0.15279824777681,0,0,0,0.075726193333184,0,1.73918693221007,0,0.679971333707751,0.539703191637817,0,0,0.421333260395256,0,0.259786004602869,0,0,0,0,0,0,0,0,1.02765491747154,1.03575153458869,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,5.59175283654366,0,0,20.9474785271045,0,0,0,0.149790639404823,0,0.125654352112864,0.173824320192276,0,0,0.324482526135515,0,0,0,0,0,0.229902104433473,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.205809224758569,1.65209391491899,8.99131926656051,0,0,1.28867461322093,1.4117846723634,5.33707305227689,3.80451252225118,9.01605216934572,6.58795818896044,7.28872105520782,4.97391180102877,6.04388670069272,15.2799299471218,4.10662294761919,2.58883655230677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54390568381871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0.214337035031592,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,6.12109756922687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,4.40690909192096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0.486213434136588,0.209613162627982,0,0,0.618105171716683,0.320919209591815,0.252697211763798,0.760437899670719,0.377252682772152,0,0.0640251524048693,0.287177344778066,0.476293691283074,0.115884325944855,0,0,0.294397840268795,0,0.354951612318675,0.476872379894642,0.872078499793971,0.188218760830661,0.169229215783353,0,0,0.407412341537585,1.68342681497322,0,0.492522411877817,0,0.619747364743864,0.385813221962283,0,0,0,0,0,0 | |phase1_expression=0,20.9385244583617,28.2099528421512,3.0246421130683,2.00358291978539,4.53274034162102,5.13947809310157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91990907352088,3.89995777814189,21.8208146363708,17.6612418425221,18.7459972436723,30.4037471130198,7.81293402255785,15.5211357458713,0,0,0,18.1976520443303,14.7948834369058,15.5168710759401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.528990979272033,0,0,0,0,0,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0.383062014255563,0,0,0.0914876436024097,0,0,0,0.15279824777681,0,0,0,0.075726193333184,0,1.73918693221007,0,0.679971333707751,0.539703191637817,0,0,0.421333260395256,0,0.259786004602869,0,0,0,0,0,0,0,0,1.02765491747154,1.03575153458869,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,5.59175283654366,0,0,20.9474785271045,0,0,0,0.149790639404823,0,0.125654352112864,0.173824320192276,0,0,0.324482526135515,0,0,0,0,0,0.229902104433473,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.205809224758569,1.65209391491899,8.99131926656051,0,0,1.28867461322093,1.4117846723634,5.33707305227689,3.80451252225118,9.01605216934572,6.58795818896044,7.28872105520782,4.97391180102877,6.04388670069272,15.2799299471218,4.10662294761919,2.58883655230677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54390568381871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0.214337035031592,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,6.12109756922687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,4.40690909192096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0,0.486213434136588,0.209613162627982,0,0,0.618105171716683,0.320919209591815,0.252697211763798,0.760437899670719,0.377252682772152,0,0.0640251524048693,0.287177344778066,0.476293691283074,0.115884325944855,0,0,0.294397840268795,0,0.354951612318675,0.476872379894642,0.872078499793971,0.188218760830661,0.169229215783353,0,0,0.407412341537585,1.68342681497322,0,0.492522411877817,0,0.619747364743864,0.385813221962283,0,0,0,0,0,0 | ||
|short_description=p@chr3:127492189..127492205,+ | |short_description=p@chr3:127492189..127492205,+ | ||
}} | }} |
Latest revision as of 00:20, 6 August 2015
Short description: | p@chr3:127492189..127492205, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:127492189..127492205, + |
Coexpression cluster: | MCL_coexpression_mm9:1278 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 8.45e-21 | 9 |
epithelial cell of alimentary canal | 8.45e-21 | 9 |
epithelial cell | 5.07e-14 | 25 |
brush border epithelial cell | 5.96e-14 | 6 |
gut absorptive cell | 5.96e-14 | 6 |
enterocyte | 5.96e-14 | 6 |
columnar/cuboidal epithelial cell | 7.42e-12 | 7 |
endo-epithelial cell | 9.08e-12 | 15 |
endodermal cell | 3.04e-10 | 20 |
M cell of gut | 9.95e-09 | 3 |
intestinal crypt stem cell | 1.96e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.51e-59 | 31 |
gastrointestinal system | 7.27e-40 | 47 |
mucosa | 2.59e-33 | 15 |
intestinal mucosa | 1.47e-29 | 13 |
wall of intestine | 1.47e-29 | 13 |
gastrointestinal system mucosa | 1.47e-29 | 13 |
epithelium of mucosa | 8.45e-21 | 9 |
gastrointestinal system epithelium | 8.45e-21 | 9 |
intestinal epithelium | 8.45e-21 | 9 |
organ component layer | 1.83e-19 | 24 |
simple columnar epithelium | 1.08e-16 | 11 |
digestive system | 1.70e-15 | 116 |
digestive tract | 1.70e-15 | 116 |
primitive gut | 1.70e-15 | 116 |
endoderm-derived structure | 4.12e-15 | 118 |
endoderm | 4.12e-15 | 118 |
presumptive endoderm | 4.12e-15 | 118 |
subdivision of digestive tract | 1.60e-13 | 114 |
small intestine | 1.34e-10 | 4 |
ileal mucosa | 1.57e-08 | 3 |
ileum | 1.57e-08 | 3 |
mucosa of small intestine | 1.57e-08 | 3 |
wall of small intestine | 1.57e-08 | 3 |
lymphoid system | 7.12e-07 | 3 |