FFCP PHASE1:Mm9::chr3:128916838..128916856,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18741 | |EntrezGene=18741 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=P97474,Q6DIA6,Q8BS64 | |UniProt=P97474,Q6DIA6,Q8BS64 | ||
|association_with_transcript=0bp_to_NM_001042502,uc008rhw.1,uc008rhx.1_5end | |association_with_transcript=0bp_to_NM_001042502,uc008rhw.1,uc008rhx.1_5end | ||
|cluster_id=chr3:128916838..128916856,+ | |||
|description=CAGE_peak_4_at_Pitx2_5end | |description=CAGE_peak_4_at_Pitx2_5end | ||
|id=chr3:128916838..128916856,+ | |id=chr3:128916838..128916856,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.01e-10,6;CL:0000677,1.01e-10,6;CL:0000584,1.01e-10,6;CL:0000075,4.49e-09,7;CL:0002563,7.09e-07,9;CL:0002251,7.09e-07,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.98e-11!43;UBERON:0005409!5.22e-10!59;UBERON:0000007!4.15e-08!8;UBERON:0003296!4.15e-08!8;UBERON:0010133!4.15e-08!8;UBERON:0001894!8.12e-08!10;UBERON:0006222!8.12e-08!10;UBERON:0000344!9.31e-08!15;UBERON:0001242!3.11e-07!13;UBERON:0000060!3.11e-07!13;UBERON:0001262!3.11e-07!13;UBERON:0004786!3.11e-07!13 | |ontology_enrichment_uberon=UBERON:0000160!9.98e-11!43;UBERON:0005409!5.22e-10!59;UBERON:0000007!4.15e-08!8;UBERON:0003296!4.15e-08!8;UBERON:0010133!4.15e-08!8;UBERON:0001894!8.12e-08!10;UBERON:0006222!8.12e-08!10;UBERON:0000344!9.31e-08!15;UBERON:0001242!3.11e-07!13;UBERON:0000060!3.11e-07!13;UBERON:0001262!3.11e-07!13;UBERON:0004786!3.11e-07!13 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.89e-26,31;UBERON:0005409,2.82e-18,47;UBERON:0000007,1.01e-16,8;UBERON:0003296,1.01e-16,8;UBERON:0010133,1.01e-16,8;UBERON:0001894,5.23e-13,10;UBERON:0006222,5.23e-13,10;UBERON:0001242,8.45e-10,13;UBERON:0001262,8.45e-10,13;UBERON:0004786,8.45e-10,13;UBERON:0000344,2.97e-08,15;UBERON:0002108,3.17e-07,4;UBERON:0003056,3.98e-07,49;UBERON:0003350,7.09e-07,9;UBERON:0004808,7.09e-07,9;UBERON:0001277,7.09e-07,9 | |||
|phase1_expression=0,1.39590163055744,2.27499619694768,4.23449895829562,2.50447864973174,1.34303417529512,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.319984845586813,0.91763712426868,3.44539178469012,1.29228598847722,1.29282739611533,1.52018735565099,1.76421090831952,1.33038306393183,0,0,0,0,0.831173226792462,0.612508068787107,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0.383062014255563,0,1.18697658957174,1.00636407962651,0.52091337055676,0,1.68828783009504,0.916789486660861,0,0.142371680799103,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0.117588707135705,0,0.988779870937496,0,0,0.970601099684455,0,0.484875253135222,5.59175283654366,0,0,0.255457055208591,0.11981512450592,0,0,1.04853447583376,0,0,0,0,0.41557608911912,0.162241263067758,0,0.124406970610093,0,0.420883711772948,2.86264974517948,1.83921683546778,2.16074555766419,1.05493372485001,0.884474488967262,0.768682321709099,1.03071897015702,0.517406741478031,0,0.756424320671277,0.175951124163949,0,0,0,0,0,0,0.257347907114715,0,0.828503090142008,0,0.36012412292203,1.18372367792605,0.983821158737019,0.462801338662135,0.697601834251224,0.268273401399619,0.934122738937356,0.329119699826961,0,0.324275238183423,0.146199987425332,0,0.268412837520744,0,0,0.660837565967596,0.793351699990633,1.2797295032114,0.928946687441754,1.15980715189884,2.01683524623343,2.89091456998331,2.66315876557583,1.89811624617805,2.47048432086016,1.50801125280162,1.1937388322469,1.55971269695296,2.69645822596266,0.648414149624083,1.99141273254367,0,0,0,0.610953983535943,0.193952487167626,0.140271639780637,0.126473074248515,0.442830443938806,0.31399745568275,0.863780147452604,0,0.166845105716094,0.393117990226406,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,1.13694847062291,0.162964976442026,0.339490171550376,0,0.167506257441816,0,0.195133647857799,0,0.221464689648775,0,0,0,0,0,0,0,0,0,0,0,1.76729649043061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,0.775284879504663,0,0,0,0,0,12.2558258071364,3.06103859853227,6.46793418913772,6.43011105094777,9.75371285032505,9.0968096977056,5.10101963866575,8.22055362609418,0,0.42366414172764,0,0.8244312647074,0.161464426695906,0.241251699712623,0.238744688006273,0,1.45740418314925,0,0,0,0,0,0,0,0.339956859987711,0.139951452323658,0,0,0.949007980743406,1.21991680276109,0.540026704109006,0.209088296014469,0.655087691238533,0.134864346384821,0.495920734352016,0.26175594198403,5.57344385154709,0,0,0.299033092087958,0.330916980914195,0,0,0,0,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.49403421976732,0,0,0.167884616364078,1.35232715822533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31136204275253,0,0.170733605754134,0,0,0.183843508450014,0.44449345560323,0.824140228955577,0.64183841918363,1.01078884705519,0.25347929989024,0.754505365544305,0.749132059759059,0.192075457214608,0.689225627467359,0.476293691283074,0.579421629724277,0.192909220463705,0,0.147198920134397,0.342869252385415,0.887379030796687,0.715308569841963,0.145346416632329,0.658765662907314,0.25384382367503,0,0,0.135804113845862,0.561142271657738,0.355905054372522,0.788035859004508,0,0.309873682371932,0.385813221962283,0.749431733813838,0.701794825336225,0.429742108096597,0.57386499620653,0.441182838239031,0.463735671240843 | |phase1_expression=0,1.39590163055744,2.27499619694768,4.23449895829562,2.50447864973174,1.34303417529512,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.319984845586813,0.91763712426868,3.44539178469012,1.29228598847722,1.29282739611533,1.52018735565099,1.76421090831952,1.33038306393183,0,0,0,0,0.831173226792462,0.612508068787107,0,0,0,0,0,0,0.377690453926732,0.202753862439029,0.367093504323363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220868540951614,0,0,0,0,0.383062014255563,0,1.18697658957174,1.00636407962651,0.52091337055676,0,1.68828783009504,0.916789486660861,0,0.142371680799103,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0.117588707135705,0,0.988779870937496,0,0,0.970601099684455,0,0.484875253135222,5.59175283654366,0,0,0.255457055208591,0.11981512450592,0,0,1.04853447583376,0,0,0,0,0.41557608911912,0.162241263067758,0,0.124406970610093,0,0.420883711772948,2.86264974517948,1.83921683546778,2.16074555766419,1.05493372485001,0.884474488967262,0.768682321709099,1.03071897015702,0.517406741478031,0,0.756424320671277,0.175951124163949,0,0,0,0,0,0,0.257347907114715,0,0.828503090142008,0,0.36012412292203,1.18372367792605,0.983821158737019,0.462801338662135,0.697601834251224,0.268273401399619,0.934122738937356,0.329119699826961,0,0.324275238183423,0.146199987425332,0,0.268412837520744,0,0,0.660837565967596,0.793351699990633,1.2797295032114,0.928946687441754,1.15980715189884,2.01683524623343,2.89091456998331,2.66315876557583,1.89811624617805,2.47048432086016,1.50801125280162,1.1937388322469,1.55971269695296,2.69645822596266,0.648414149624083,1.99141273254367,0,0,0,0.610953983535943,0.193952487167626,0.140271639780637,0.126473074248515,0.442830443938806,0.31399745568275,0.863780147452604,0,0.166845105716094,0.393117990226406,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0,1.13694847062291,0.162964976442026,0.339490171550376,0,0.167506257441816,0,0.195133647857799,0,0.221464689648775,0,0,0,0,0,0,0,0,0,0,0,1.76729649043061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302323556964751,0,0,0,0.775284879504663,0,0,0,0,0,12.2558258071364,3.06103859853227,6.46793418913772,6.43011105094777,9.75371285032505,9.0968096977056,5.10101963866575,8.22055362609418,0,0.42366414172764,0,0.8244312647074,0.161464426695906,0.241251699712623,0.238744688006273,0,1.45740418314925,0,0,0,0,0,0,0,0.339956859987711,0.139951452323658,0,0,0.949007980743406,1.21991680276109,0.540026704109006,0.209088296014469,0.655087691238533,0.134864346384821,0.495920734352016,0.26175594198403,5.57344385154709,0,0,0.299033092087958,0.330916980914195,0,0,0,0,0,0,0,0.288030006257865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.49403421976732,0,0,0.167884616364078,1.35232715822533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31136204275253,0,0.170733605754134,0,0,0.183843508450014,0.44449345560323,0.824140228955577,0.64183841918363,1.01078884705519,0.25347929989024,0.754505365544305,0.749132059759059,0.192075457214608,0.689225627467359,0.476293691283074,0.579421629724277,0.192909220463705,0,0.147198920134397,0.342869252385415,0.887379030796687,0.715308569841963,0.145346416632329,0.658765662907314,0.25384382367503,0,0,0.135804113845862,0.561142271657738,0.355905054372522,0.788035859004508,0,0.309873682371932,0.385813221962283,0.749431733813838,0.701794825336225,0.429742108096597,0.57386499620653,0.441182838239031,0.463735671240843 | ||
|short_description=p4@Pitx2 | |short_description=p4@Pitx2 | ||
}} | }} |
Latest revision as of 14:22, 1 October 2015
Short description: | p4@Pitx2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pitx2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001042502, uc008rhw.1, uc008rhx.1_5end |
EntrezGene: | Pitx2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.01e-10 | 6 |
gut absorptive cell | 1.01e-10 | 6 |
enterocyte | 1.01e-10 | 6 |
columnar/cuboidal epithelial cell | 4.49e-09 | 7 |
intestinal epithelial cell | 7.09e-07 | 9 |
epithelial cell of alimentary canal | 7.09e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.89e-26 | 31 |
gastrointestinal system | 2.82e-18 | 47 |
pituitary gland | 1.01e-16 | 8 |
gland of diencephalon | 1.01e-16 | 8 |
neuroendocrine gland | 1.01e-16 | 8 |
diencephalon | 5.23e-13 | 10 |
future diencephalon | 5.23e-13 | 10 |
intestinal mucosa | 8.45e-10 | 13 |
wall of intestine | 8.45e-10 | 13 |
gastrointestinal system mucosa | 8.45e-10 | 13 |
mucosa | 2.97e-08 | 15 |
small intestine | 3.17e-07 | 4 |
pre-chordal neural plate | 3.98e-07 | 49 |
epithelium of mucosa | 7.09e-07 | 9 |
gastrointestinal system epithelium | 7.09e-07 | 9 |
intestinal epithelium | 7.09e-07 | 9 |