FFCP PHASE1:Hg19::chr10:126138597..126138612,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=390010 | |EntrezGene=390010 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31652 | |HGNC=31652 | ||
|TSSclassifier=strong | |||
|UniProt=G3V2X8,Q9UD57 | |UniProt=G3V2X8,Q9UD57 | ||
|association_with_transcript=-47bp_to_ENST00000440536,NM_001146340,uc010quf.1_5end | |association_with_transcript=-47bp_to_ENST00000440536,NM_001146340,uc010quf.1_5end | ||
|cluster_id=chr10:126138597..126138612,- | |||
|coexpression_cluster_id=C196 | |||
|description=CAGE_peak_1_at_NKX1-2_5end | |description=CAGE_peak_1_at_NKX1-2_5end | ||
|id=chr10:126138597..126138612,- | |id=chr10:126138597..126138612,- | ||
|ontology_enrichment_celltype=CL:0002076!3.82e-14!43;CL:0000066!4.52e-14!254;CL:0000223!2.02e-13!59;CL:0002322!1.28e-11!5;CL:0002251!8.47e-09!21;CL:0002166!9.05e-07!3 | |ontology_enrichment_celltype=CL:0002076!3.82e-14!43;CL:0000066!4.52e-14!254;CL:0000223!2.02e-13!59;CL:0002322!1.28e-11!5;CL:0002251!8.47e-09!21;CL:0002166!9.05e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;8.49e-30;5!CL:0002321;8.65e-10;15!CL:0000540;1.20e-09;6!CL:0000404;1.20e-09;6!CL:0000039;1.70e-08;7!CL:0000586;1.70e-08;7!CL:1001319;8.92e-07;1!CL:1000600;8.92e-07;1!CL:0000313;8.92e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,8.49e-30,5;CL:0000540,1.18e-09,6;CL:0000031,1.18e-09,6;CL:0000404,1.18e-09,6;CL:0000066,5.04e-09,253;CL:0000039,1.70e-08,7;CL:0000586,1.70e-08,7;CL:0000047,2.42e-07,8;CL:0000313,9.18e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.07e-14;10!UBERON:0005564;1.07e-14;10!CL:0000031;1.20e-09;6 | |||
|ontology_enrichment_disease_v019=DOID:3151;3.82e-07;1!DOID:3149;3.82e-07;1!DOID:2152;8.92e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.87e-10,106;DOID:0050687,5.29e-08,143;DOID:3151,3.82e-07,1;DOID:3149,3.82e-07,1;DOID:2152,9.18e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.29e-08!82;UBERON:0000033!4.73e-08!123;UBERON:0005743!1.07e-07!86;UBERON:0001893!2.28e-07!34;UBERON:0000153!2.56e-07!129;UBERON:0007811!2.56e-07!129;UBERON:0000924!4.16e-07!173;UBERON:0006601!4.16e-07!173;UBERON:0004121!5.80e-07!169;UBERON:0000955!6.13e-07!69;UBERON:0006238!6.13e-07!69 | |ontology_enrichment_uberon=UBERON:0001017!2.29e-08!82;UBERON:0000033!4.73e-08!123;UBERON:0005743!1.07e-07!86;UBERON:0001893!2.28e-07!34;UBERON:0000153!2.56e-07!129;UBERON:0007811!2.56e-07!129;UBERON:0000924!4.16e-07!173;UBERON:0006601!4.16e-07!173;UBERON:0004121!5.80e-07!169;UBERON:0000955!6.13e-07!69;UBERON:0006238!6.13e-07!69 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.75e-07;8!UBERON:0000991;7.34e-07;21!UBERON:0004645;8.92e-07;1!UBERON:0004911;8.92e-07;1!UBERON:0001256;8.92e-07;1!UBERON:0001259;8.92e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.75e-07,8;UBERON:0000991,7.43e-07,21;UBERON:0009196,7.43e-07,21;UBERON:0009117,7.43e-07,21;UBERON:0005564,7.43e-07,21;UBERON:0004911,9.18e-07,1 | |||
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| ||
|short_description=p1@NKX1-2 | |short_description=p1@NKX1-2 | ||
}} | }} |
Latest revision as of 22:14, 16 September 2015
Short description: | p1@NKX1-2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NKX1-2_5end |
Coexpression cluster: | C196_testicular_iPS_H9_teratocarcinoma_HES3GFP_choriocarcinoma_endometrial |
Association with transcript: | -47bp_to_ENST00000440536, NM_001146340, uc010quf.1_5end |
EntrezGene: | NKX1-2 |
HGNC: | 31652 |
UniProt: | G3V2X8Q9UD57 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 8.49e-30 | 5 |
neuron | 1.18e-09 | 6 |
neuroblast | 1.18e-09 | 6 |
electrically signaling cell | 1.18e-09 | 6 |
epithelial cell | 5.04e-09 | 253 |
germ line cell | 1.70e-08 | 7 |
germ cell | 1.70e-08 | 7 |
neuronal stem cell | 2.42e-07 | 8 |
serous secreting cell | 9.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 1.75e-07 | 8 |
gonad | 7.43e-07 | 21 |
indifferent external genitalia | 7.43e-07 | 21 |
indifferent gonad | 7.43e-07 | 21 |
gonad primordium | 7.43e-07 | 21 |
epithelium of female gonad | 9.18e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.87e-10 | 106 |
cell type cancer | 5.29e-08 | 143 |
skin squamous cell carcinoma | 3.82e-07 | 1 |
keratoacanthoma | 3.82e-07 | 1 |
ovary epithelial cancer | 9.18e-07 | 1 |