FFCP PHASE1:Hg19::chr14:68159152..68159155,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51109 | |EntrezGene=51109 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17964 | |HGNC=17964 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=412bp_to_ENST00000553578_5end | |association_with_transcript=412bp_to_ENST00000553578_5end | ||
|cluster_id=chr14:68159152..68159155,- | |||
|description=CAGE_peak_3_at_RDH11_5end | |description=CAGE_peak_3_at_RDH11_5end | ||
|id=chr14:68159152..68159155,- | |id=chr14:68159152..68159155,- | ||
|ontology_enrichment_celltype=CL:0000548!1.63e-15!679;CL:0000004!1.63e-15!679;CL:0000255!1.63e-15!679;CL:0000012!2.16e-15!682;CL:0000003!1.22e-14!722;CL:0002371!2.69e-14!591;CL:0000144!4.18e-12!625;CL:0000220!1.04e-11!246;CL:0002321!1.23e-11!248;CL:0000055!6.89e-11!180;CL:0000066!5.51e-08!254;CL:0000393!1.34e-07!60;CL:0000211!1.34e-07!60;CL:0000183!2.31e-07!59;CL:0000680!6.89e-07!57;CL:0000056!6.89e-07!57;CL:0000355!6.89e-07!57 | |ontology_enrichment_celltype=CL:0000548!1.63e-15!679;CL:0000004!1.63e-15!679;CL:0000255!1.63e-15!679;CL:0000012!2.16e-15!682;CL:0000003!1.22e-14!722;CL:0002371!2.69e-14!591;CL:0000144!4.18e-12!625;CL:0000220!1.04e-11!246;CL:0002321!1.23e-11!248;CL:0000055!6.89e-11!180;CL:0000066!5.51e-08!254;CL:0000393!1.34e-07!60;CL:0000211!1.34e-07!60;CL:0000183!2.31e-07!59;CL:0000680!6.89e-07!57;CL:0000056!6.89e-07!57;CL:0000355!6.89e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000307;1.15e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.64e-08,3;CL:0000069,1.64e-08,3;CL:0000307,1.64e-08,3;CL:0000377,1.64e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000377;1.15e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!1.94e-09!138;UBERON:0005256!2.52e-08!143;UBERON:0002100!2.35e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001801;4.71e-09;14!UBERON:0000019;3.19e-08;19!UBERON:0000047;3.19e-08;19!UBERON:0004088;3.19e-08;19!UBERON:0010230;3.19e-08;19!UBERON:0000970;9.68e-08;20!UBERON:0002104;2.64e-07;21!UBERON:0001456;2.64e-07;21!UBERON:0003891;6.93e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001801,4.07e-09,14;UBERON:0000019,6.53e-08,20;UBERON:0000047,6.53e-08,20;UBERON:0010312,6.53e-08,20;UBERON:0004088,6.53e-08,20;UBERON:0010230,6.53e-08,20;UBERON:0003072,6.53e-08,20;UBERON:0004128,6.53e-08,20;UBERON:0003071,6.53e-08,20;UBERON:0000970,1.82e-07,21;UBERON:0002104,1.82e-07,21;UBERON:0001456,4.61e-07,22;UBERON:0003891,5.91e-07,4;UBERON:0000119,7.97e-07,309 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.522371256399677,0.491467873003018,1.39560233594486,3.49506195408276,0.263766978228454,2.59909341216098,0.331397375727916,0,0,0,0.487932798790507,1.23121058076788,0.204000691244253,1.56727360739044,3.14859585844162,0.273748850145768,0.251085279189606,0.305653622991805,0.328402357799783,0.236132343941038,0,0,0,0,0.30120591877825,0.739508020333575,0.387336002901508,1.42169232487422,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0.632924774881769,0.211255286311942,0,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0.167186495390678,0,0,0,0.334231370655521,0.294605907474837,0.221533894583621,0.270803863765016,0,0.130059347559878,0.493313713811028,0.276350017785848,0,0,0,0,0.226618685395132,0,0,0,0.318565414324097,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,0,0.639312809217652,0.361439152384566,0,0.144846518960824,1.5905718941022,0.486634870302636,2.9305793320861,0.665188192387692,0.263504357079378,1.17881167947941,0.728590576585084,0,0,0,0,0,0,0,1.78886166630035,0,1.73570250803797,0,0.838998872419812,1.10047216776027,0.417989933073621,0.516833518338658,0.35576626268671,0,0.402829317109147,0.760272105718513,0,0.735326160691737,0,1.07159673940896,0.22452937262617,0,0,6.6448596169769,0,0,0,3.05265836499774,0,0.633152558322899,0,0,0,0,0,0,0.622422070799533,0,0.490385709340376,2.27036141467397,0,0.937285727335186,0,3.4228309292667,0.448346041655403,0.352303495931295,0.161872944368132,0.140450806702248,1.22492502752936,0.61417158655884,0.309977343527296,1.18800285728205,0,0,0,1.17835279767846,0,0.554128230968366,0,0.30648779579902,0,0.794025282120147,0,0.427114777637135,0.635795703478686,0,0.412210116953756,0,0.558350568994769,0,0.292311015483596,0,0.552299391853796,0.646584227275248,0,0.201504196455281,1.01736355386293,0.57978255948989,0.545492241181669,0.286804595389004,0,0.265059536642971,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.236613600079688,0,0,0.220587945464788,0.217879444092406,0.237270619111097,0.404493924480493,0.196221465125346,0,0.738155454624648,0,1.2347220339942,1.47008711385542,0,0,0,0,0.614942192715568,1.54411029268673,0.658501712451753,4.49607013030478,0.301586917234893,0.740707561268237,2.93227474779292,1.03993478527958,0,1.73895607462615,0.234817388471643,1.01056513432752,0.462985512576611,0.570762456703795,0.790204397959275,0.858486162094873,0,0,0,0.93733833986777,0.503946384596579,0.850650583454319,0.806026704325635,1.16253575405585,0.383382679165211,0,0,0,0,0,0.190493682876507,0.763976851116555,0,0,0,0,0.285826432630578,1.45770409648969,0.43596006883328,0.66004457238855,0,0,0,2.12750493267896,0,1.28603687131071,0,0,1.28680194292333,1.08524321078289,0.823240336780769,0.977208552881205,1.06617584622764,0,0,0,0,1.2162378064119,0,0,0.239624855491583,0,0,0.144781306667579,0.410952645100767,0.716243852959582,0.336255431980582,0,0,0,0.508189248444927,0,0.773288812777695,0,0.637938751653163,0,0,0,1.34960640891054,0.500170521059677,0.542530047399471,0.207970861530807,0.178428988797162,0,0.117141414992713,0.902838299183157,0,0,0.664225598535437,0.184369168541703,0.695068915744663,2.15381273209015,0.343143423810856,0,0,0,0,1.66435439510497,0,0,0.153461973288062,0.280660094433074,0.128139149255701,0.511707249066704,0,0,0,0.355123450626254,0.98552587216571,0,0.116210378459959,0.362578348774867,0,0.276242966807689,0.229628896329213,0.364182336013434,0.262248829918848,2.70719767744447,1.00119938235739,0.784349769176855,0,0.844413031143006,0,0,0,0,1.89662506280697,0.501689773854853,1.52925763827023,0,0.223874754722178,1.31555925987561,2.0914836081992,0.769350375349168,1.96808787419823,0.976135183992909,0,0,0.082509499920588,0,0,0,0.48335359146061,0.154048617114644,0.307007349452259,0.275673144969061,0.751941714077915,0.290033387828457,0.255679882248303,0.712256285173899,0.991709492165869,0.384380134730212,0.127612712494584,0.10115778085555,0.464845549297286,0,0,0.308033580176089,0,1.73986598415015,0.74129687641568,0.286249773483982,1.86079184679834,0.316379424718726,0.190630193923825,1.27948895655667,0.855877976067841,2.54562598340749,0,1.07923474549989,0.54907405947211,0.471249609382746,0.404364963146632,0,0,1.46290121726877,0,0,0.409499734223957,0.424216295861138,1.13008116620243,0,0,0,0.578775534266688,1.31178950409327,0.811641507850816,0.30982349809975,0.281695602532241,1.29070216983646,1.08073945114433,1.07001315444375,2.83808851256478,0.211107635297664,0,3.41525856389144,0.349934720244983,1.25088746543166,1.34060455107157,1.08890984861323,0,1.72202149068492,0,0.886860307073351,0.689170200620878,0,1.52927441428475,0,0.714695326373367,0.411362273086194,0.648473311192717,0.540031437238115,0,0,0,0,0.371606350251437,0.721346064882224,0.355709216742071,0.318852545457645,0,0.191505370132367,0.211673582723883,0,0,0.456469358066384,0,0,0.169291777801603,0,0.403599414382095,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0.1871405404082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| ||
|short_description=p3@RDH11 | |short_description=p3@RDH11 | ||
}} | }} |
Latest revision as of 05:19, 25 September 2015
Short description: | p3@RDH11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RDH11_5end |
Coexpression cluster: | NA |
Association with transcript: | 412bp_to_ENST00000553578_5end |
EntrezGene: | RDH11 |
HGNC: | 17964 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.64e-08 | 3 |
branched duct epithelial cell | 1.64e-08 | 3 |
tracheal epithelial cell | 1.64e-08 | 3 |
tracheoblast | 1.64e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
anterior segment of eyeball | 4.07e-09 | 14 |
camera-type eye | 6.53e-08 | 20 |
simple eye | 6.53e-08 | 20 |
immature eye | 6.53e-08 | 20 |
ocular region | 6.53e-08 | 20 |
eyeball of camera-type eye | 6.53e-08 | 20 |
optic cup | 6.53e-08 | 20 |
optic vesicle | 6.53e-08 | 20 |
eye primordium | 6.53e-08 | 20 |
eye | 1.82e-07 | 21 |
visual system | 1.82e-07 | 21 |
face | 4.61e-07 | 22 |
stroma | 5.91e-07 | 4 |
cell layer | 7.97e-07 | 309 |