FFCP PHASE1:Hg19::chr11:102745704..102745720,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4321 | |EntrezGene=4321 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=7158 | |HGNC=7158 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001phk.2_5end | |association_with_transcript=0bp_to_uc001phk.2_5end | ||
|cluster_id=chr11:102745704..102745720,- | |||
|coexpression_cluster_id=C54 | |||
|description=CAGE_peak_1_at_MMP12_5end | |description=CAGE_peak_1_at_MMP12_5end | ||
|id=chr11:102745704..102745720,- | |id=chr11:102745704..102745720,- | ||
|ontology_enrichment_celltype=CL:0000359!2.43e-09!32 | |ontology_enrichment_celltype=CL:0000359!2.43e-09!32 | ||
|ontology_enrichment_celltype_v019=CL:0000359;5.09e-15;32!CL:0000840;2.94e-11;5!CL:0002166;7.51e-09;3!CL:0002541;1.92e-08;3!CL:0000192;2.39e-08;43!CL:0002595;2.93e-08;5!CL:0000990;2.56e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,6.21e-16,32;CL:0000840,3.07e-11,5;CL:0001029,3.07e-11,5;CL:0000192,9.00e-11,43;CL:0000514,9.00e-11,43;CL:0000680,4.58e-09,58;CL:0000056,4.58e-09,58;CL:0000355,4.58e-09,58;CL:0002166,7.52e-09,3;CL:0000187,1.09e-08,55;CL:0002541,1.94e-08,3;CL:0002595,3.64e-08,5;CL:0000393,1.98e-07,61;CL:0000211,1.98e-07,61;CL:0000990,2.63e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;2.39e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;4.52e-07;3!DOID:127;4.52e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.58e-07,3;DOID:127,3.58e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0004573!3.73e-09!33;UBERON:0004571!3.73e-09!33;UBERON:0001637!4.20e-09!42;UBERON:0003509!4.20e-09!42;UBERON:0004572!4.20e-09!42;UBERON:0000468!3.41e-07!659;UBERON:0000467!5.13e-07!625;UBERON:0000480!6.05e-07!626;UBERON:0004872!9.33e-07!84 | |ontology_enrichment_uberon=UBERON:0004573!3.73e-09!33;UBERON:0004571!3.73e-09!33;UBERON:0001637!4.20e-09!42;UBERON:0003509!4.20e-09!42;UBERON:0004572!4.20e-09!42;UBERON:0000468!3.41e-07!659;UBERON:0000467!5.13e-07!625;UBERON:0000480!6.05e-07!626;UBERON:0004872!9.33e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.46e-09;33!UBERON:0004571;4.46e-09;33!UBERON:0003124;1.92e-08;3!UBERON:0000920;1.92e-08;3!UBERON:0004177;2.00e-08;5!UBERON:0005057;2.00e-08;5!UBERON:0003834;2.93e-08;5!UBERON:0001533;2.93e-08;5!UBERON:0001637;1.64e-07;42!UBERON:0003509;1.64e-07;42!UBERON:0004572;1.64e-07;42!UBERON:0001135;2.44e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.98e-11,42;UBERON:0003509,3.98e-11,42;UBERON:0004572,3.98e-11,42;UBERON:0002385,5.33e-10,64;UBERON:0001015,5.33e-10,64;UBERON:0000383,5.33e-10,64;UBERON:0004573,1.41e-09,33;UBERON:0004571,1.41e-09,33;UBERON:0000920,1.94e-08,3;UBERON:0001134,3.40e-08,62;UBERON:0002036,3.40e-08,62;UBERON:0003082,3.40e-08,62;UBERON:0003834,3.64e-08,5;UBERON:0001533,3.64e-08,5;UBERON:0007500,1.03e-07,59;UBERON:0001981,1.03e-07,59;UBERON:0004537,1.03e-07,59;UBERON:0006965,1.03e-07,59;UBERON:0002204,1.06e-07,167;UBERON:0004872,1.78e-07,83;UBERON:0000486,1.87e-07,83;UBERON:0001135,2.45e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,1.89515962028049,0,0,0,0,0,0,0,43.7011345193654,50.0236458259901,41.6276751520803,48.7932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.589405839739707,0,0,778.91374477124,776.444498617433,931.769387316207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.794455084879313,0,0.354668382198357,0,0,1.2333377420858,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0.421352420106746,0,0,0,0,0,0,0,0,0,1.93944880838928,0,0,0.751190294532984,0,0.538168907066586,0,0,2.40072876867522,0,0.772921620136887,0.18611685633159,20.928265197917,0.0974370051611986,1.26216887122057,0,0,0.355009592516614,0.201504196455281,0.339121184620975,6.3776081543888,34.9115034356268,0.860413786167011,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.661763836394364,0.435758888184812,0.237270619111097,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0.548751427043128,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93947209739836,12.1682217872404,1.33768046059855,239.021276666281,302.199848629748,20.8409392946308,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0.26593811658487,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,1.2162378064119,0.502257091432126,0,1.4377491329495,0,0,1.30303176000821,0,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,7.71048469013278,1.42049380250502,2.13530605635904,0,5.57809816607804,0,1.20303882181971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98818933778395,0,0,0,0,0,0,0,0,0,0,0,5.79541066429486,0,0.165284915360978,0,0,0.10115778085555,0,2.83331112147576,0.6970372701606,0,0,0.869932992075073,3.7064843820784,6.01124524316363,0,0,0,0,0,0,3.92474320099615,0,0,0,1.81964233415984,0,0,0,7.06769119930725,1.05650146756755,0,0,0,0,45.7772892916442,60.5062221650193,0,0,30.2336461674429,23.546585855581,0,0,0,23.1836183462813,0,1.26664581178598,0.329294892959902,0,0,0,0,0,2.7301702225266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,0.71623345421307,0.593929361665277,0,0,0,0.111308705022906,0,0,0.398495976502139,29.2860950463017,0,0,0,0.311039587661807,0,0,0,2.95930216910801,0,0,0,0,0,0.260427761085233,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538651809526579,37.8287625412044,0,0.0897576444097721,0,22.9680835006982,20.2430681418116,17.5901476086149,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,0.176915129006678,5.49927130440263,0,0,0,0,0,0,0,2.93496928398135,0,0,1.20990716048664,0,0.379119477770928,0.60129367765797,0.933193722575224,0,0,0,0,0,0,0,0.195984794828755,0,8.91106008034354,0,0.0967563312890851,0,0,0.290967049465258,0,0.225980740780532,0,0.19871461170299,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,4.68389848605125,0,0,0,0,0,0,0,0,0,0,0,84.1402354402612,5.41661368190565,0,0,0.0788057072991982,0,0,0,0,0,0,0,1.62899880526114,1.72844298240254,3.26587360109409,0,0,0.170388021785422,0,0.58620893471233,0,0,0,0,0,0.320362237703084,0,2.07119527673598,26.7929651778453,0,0,0,0.544017803369474,0.7520696820681,4.59518365145192,0.655745261419609,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,3.88062487505873,0.934853239388898,0,0,0,0,0.457680136793847,0,0.310874401165561,0.443565449968902,0,0,0.155262956876259,0,0,3.1304703708704,0,0,0,1.09109195521536,0,0,0.796191777397232,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72041036127604,0,0,0,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.08515854706359,0.11796972334774,1.28400018965175,0,0,0,0,0.376051641746286,0,0,0,0.49131575253029,0,0,0,0,0,0,1.64477330057155,0,0.175871244359621,7.41022080309653,0,0,0.606965604236632,0,11.7087128614683,0,0,0,0,0,0.111231401892069,0.39246546425257,0,0,1.82631744101899,0,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0.255640214277473,0,0.68732060563215,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,3.08696632431779,1.31135736302374,0,6.61900468735545,0,0,0,0,0.169927114687817,56.7662864598316,6.57470457330487,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.407955318967927,0,0,0,0.378893491091197,0,0,0,0.639701945702943,0,6.45889098360061,17.4429947171361,0.224263725161227,0.12729431655633,0,2.17716747896961,0,12.5274818607133,5.66605422602143,0.332660356546013,0.244209805832924,0,0,0,0,0,0,0,1.20764276154616,0 | |phase1_expression=0,0,0,0,0,0,0,1.89515962028049,0,0,0,0,0,0,0,43.7011345193654,50.0236458259901,41.6276751520803,48.7932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0.589405839739707,0,0,778.91374477124,776.444498617433,931.769387316207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0.794455084879313,0,0.354668382198357,0,0,1.2333377420858,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0.421352420106746,0,0,0,0,0,0,0,0,0,1.93944880838928,0,0,0.751190294532984,0,0.538168907066586,0,0,2.40072876867522,0,0.772921620136887,0.18611685633159,20.928265197917,0.0974370051611986,1.26216887122057,0,0,0.355009592516614,0.201504196455281,0.339121184620975,6.3776081543888,34.9115034356268,0.860413786167011,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.661763836394364,0.435758888184812,0.237270619111097,0.269662616320329,0.392442930250692,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0.548751427043128,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93947209739836,12.1682217872404,1.33768046059855,239.021276666281,302.199848629748,20.8409392946308,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0.26593811658487,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,1.2162378064119,0.502257091432126,0,1.4377491329495,0,0,1.30303176000821,0,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,7.71048469013278,1.42049380250502,2.13530605635904,0,5.57809816607804,0,1.20303882181971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98818933778395,0,0,0,0,0,0,0,0,0,0,0,5.79541066429486,0,0.165284915360978,0,0,0.10115778085555,0,2.83331112147576,0.6970372701606,0,0,0.869932992075073,3.7064843820784,6.01124524316363,0,0,0,0,0,0,3.92474320099615,0,0,0,1.81964233415984,0,0,0,7.06769119930725,1.05650146756755,0,0,0,0,45.7772892916442,60.5062221650193,0,0,30.2336461674429,23.546585855581,0,0,0,23.1836183462813,0,1.26664581178598,0.329294892959902,0,0,0,0,0,2.7301702225266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.66270448179735,0,0,0,0.71623345421307,0.593929361665277,0,0,0,0.111308705022906,0,0,0.398495976502139,29.2860950463017,0,0,0,0.311039587661807,0,0,0,2.95930216910801,0,0,0,0,0,0.260427761085233,0,0,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538651809526579,37.8287625412044,0,0.0897576444097721,0,22.9680835006982,20.2430681418116,17.5901476086149,0,0,0,0,0,0,0,0,0,0,0,0,4.97630965539252,0.176915129006678,5.49927130440263,0,0,0,0,0,0,0,2.93496928398135,0,0,1.20990716048664,0,0.379119477770928,0.60129367765797,0.933193722575224,0,0,0,0,0,0,0,0.195984794828755,0,8.91106008034354,0,0.0967563312890851,0,0,0.290967049465258,0,0.225980740780532,0,0.19871461170299,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.134366944973453,4.68389848605125,0,0,0,0,0,0,0,0,0,0,0,84.1402354402612,5.41661368190565,0,0,0.0788057072991982,0,0,0,0,0,0,0,1.62899880526114,1.72844298240254,3.26587360109409,0,0,0.170388021785422,0,0.58620893471233,0,0,0,0,0,0.320362237703084,0,2.07119527673598,26.7929651778453,0,0,0,0.544017803369474,0.7520696820681,4.59518365145192,0.655745261419609,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,3.88062487505873,0.934853239388898,0,0,0,0,0.457680136793847,0,0.310874401165561,0.443565449968902,0,0,0.155262956876259,0,0,3.1304703708704,0,0,0,1.09109195521536,0,0,0.796191777397232,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72041036127604,0,0,0,0,0,0.736423801007363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.08515854706359,0.11796972334774,1.28400018965175,0,0,0,0,0.376051641746286,0,0,0,0.49131575253029,0,0,0,0,0,0,1.64477330057155,0,0.175871244359621,7.41022080309653,0,0,0.606965604236632,0,11.7087128614683,0,0,0,0,0,0.111231401892069,0.39246546425257,0,0,1.82631744101899,0,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0.255640214277473,0,0.68732060563215,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,3.08696632431779,1.31135736302374,0,6.61900468735545,0,0,0,0,0.169927114687817,56.7662864598316,6.57470457330487,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.407955318967927,0,0,0,0.378893491091197,0,0,0,0.639701945702943,0,6.45889098360061,17.4429947171361,0.224263725161227,0.12729431655633,0,2.17716747896961,0,12.5274818607133,5.66605422602143,0.332660356546013,0.244209805832924,0,0,0,0,0,0,0,1.20764276154616,0 | ||
|short_description=p1@MMP12 | |short_description=p1@MMP12 | ||
}} | }} |
Latest revision as of 18:39, 24 September 2015
Short description: | p1@MMP12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MMP12_5end |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | 0bp_to_uc001phk.2_5end |
EntrezGene: | MMP12 |
HGNC: | 7158 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 6.21e-16 | 32 |
immature conventional dendritic cell | 3.07e-11 | 5 |
common dendritic progenitor | 3.07e-11 | 5 |
smooth muscle cell | 9.00e-11 | 43 |
smooth muscle myoblast | 9.00e-11 | 43 |
muscle precursor cell | 4.58e-09 | 58 |
myoblast | 4.58e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.58e-09 | 58 |
epithelial cell of Malassez | 7.52e-09 | 3 |
muscle cell | 1.09e-08 | 55 |
chorionic membrane mesenchymal stem cell | 1.94e-08 | 3 |
smooth muscle cell of the subclavian artery | 3.64e-08 | 5 |
electrically responsive cell | 1.98e-07 | 61 |
electrically active cell | 1.98e-07 | 61 |
conventional dendritic cell | 2.63e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
artery | 3.98e-11 | 42 |
arterial blood vessel | 3.98e-11 | 42 |
arterial system | 3.98e-11 | 42 |
muscle tissue | 5.33e-10 | 64 |
musculature | 5.33e-10 | 64 |
musculature of body | 5.33e-10 | 64 |
systemic artery | 1.41e-09 | 33 |
systemic arterial system | 1.41e-09 | 33 |
egg chorion | 1.94e-08 | 3 |
skeletal muscle tissue | 3.40e-08 | 62 |
striated muscle tissue | 3.40e-08 | 62 |
myotome | 3.40e-08 | 62 |
thoracic segment blood vessel | 3.64e-08 | 5 |
subclavian artery | 3.64e-08 | 5 |
epithelial tube open at both ends | 1.03e-07 | 59 |
blood vessel | 1.03e-07 | 59 |
blood vasculature | 1.03e-07 | 59 |
vascular cord | 1.03e-07 | 59 |
musculoskeletal system | 1.06e-07 | 167 |
splanchnic layer of lateral plate mesoderm | 1.78e-07 | 83 |
multilaminar epithelium | 1.87e-07 | 83 |
smooth muscle tissue | 2.45e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.58e-07 | 3 |
leiomyoma | 3.58e-07 | 3 |