FFCP PHASE1:Hg19::chr12:52475500..52475511,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52475500..52475511,+ | |||
|description=CAGE_peak_at_chr12:52475500..52475511,+ | |description=CAGE_peak_at_chr12:52475500..52475511,+ | ||
|id=chr12:52475500..52475511,+ | |id=chr12:52475500..52475511,+ | ||
|ontology_enrichment_celltype=CL:0000784!5.68e-21!3;CL:0000242!1.35e-14!2;CL:0002504!2.21e-09!3;CL:1000279!2.21e-09!3;CL:1000280!2.21e-09!3 | |ontology_enrichment_celltype=CL:0000784!5.68e-21!3;CL:0000242!1.35e-14!2;CL:0002504!2.21e-09!3;CL:1000279!2.21e-09!3;CL:1000280!2.21e-09!3 | ||
|ontology_enrichment_celltype_v019=CL:0000784;8.21e-66;3!CL:0000123;1.22e-44;2!CL:0000242;1.22e-44;2!CL:0000451;1.36e-18;10!CL:0000312;1.48e-18;5!CL:0000240;1.22e-15;6!CL:0000311;1.22e-15;6!CL:0000079;1.22e-15;6!CL:0000237;1.22e-15;6!CL:0000771;3.06e-12;2!CL:0000362;9.23e-11;9!CL:0002159;3.04e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,9.19e-66,3;CL:0000242,1.53e-44,2;CL:0000451,1.40e-18,10;CL:0000312,1.62e-18,5;CL:0000240,1.31e-15,6;CL:0000311,1.31e-15,6;CL:0000079,1.31e-15,6;CL:0000237,1.31e-15,6;CL:0000036,1.31e-15,6;CL:0000357,1.31e-15,6;CL:0000114,1.31e-15,6;CL:0000771,3.24e-12,2;CL:0000362,9.69e-11,9;CL:0002159,3.14e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000357;1.22e-15;6!CL:0000114;1.22e-15;6 | |||
|ontology_enrichment_disease=DOID:12603!6.10e-08!1;DOID:630!7.97e-08!1;DOID:0050177!7.97e-08!1;DOID:0050427!7.97e-08!1;DOID:2355!1.87e-07!1 | |ontology_enrichment_disease=DOID:12603!6.10e-08!1;DOID:630!7.97e-08!1;DOID:0050177!7.97e-08!1;DOID:0050427!7.97e-08!1;DOID:2355!1.87e-07!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.79e-09!7;UBERON:0002370!7.98e-08!4;UBERON:0005058!7.98e-08!4;UBERON:0009113!7.98e-08!4;UBERON:0003295!7.98e-08!4;UBERON:0005562!7.98e-08!4 | |ontology_enrichment_uberon=UBERON:0004177!3.79e-09!7;UBERON:0002370!7.98e-08!4;UBERON:0005058!7.98e-08!4;UBERON:0009113!7.98e-08!4;UBERON:0003295!7.98e-08!4;UBERON:0005562!7.98e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.00e-45;2!UBERON:0005058;5.00e-45;2!UBERON:0009113;5.00e-45;2!UBERON:0004177;1.04e-18;5!UBERON:0005057;1.04e-18;5!UBERON:0001003;8.09e-07;15!UBERON:0007376;8.09e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.29e-23,4;UBERON:0005058,3.29e-23,4;UBERON:0009113,3.29e-23,4;UBERON:0003295,3.29e-23,4;UBERON:0005562,3.29e-23,4;UBERON:0003351,7.79e-16,6;UBERON:0004177,1.02e-13,7;UBERON:0005057,1.02e-13,7;UBERON:0000974,6.78e-10,10;UBERON:0003408,6.78e-10,10;UBERON:0001042,6.78e-10,10;UBERON:0009145,6.78e-10,10;UBERON:0006562,4.43e-09,11;UBERON:0009722,4.43e-09,11;UBERON:0007690,4.43e-09,11;UBERON:0001003,8.33e-07,15;UBERON:0007376,8.33e-07,15;UBERON:0007383,8.33e-07,15 | |||
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|short_description=p@chr12:52475500..52475511,+ | |short_description=p@chr12:52475500..52475511,+ | ||
}} | }} |
Latest revision as of 09:28, 24 July 2015
Short description: | p@chr12:52475500..52475511, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52475500..52475511, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 9.19e-66 | 3 |
Merkel cell | 1.53e-44 | 2 |
dendritic cell | 1.40e-18 | 10 |
keratinocyte | 1.62e-18 | 5 |
stratified squamous epithelial cell | 1.31e-15 | 6 |
keratin accumulating cell | 1.31e-15 | 6 |
stratified epithelial cell | 1.31e-15 | 6 |
keratinizing barrier epithelial cell | 1.31e-15 | 6 |
epithelial fate stem cell | 1.31e-15 | 6 |
stratified epithelial stem cell | 1.31e-15 | 6 |
surface ectodermal cell | 1.31e-15 | 6 |
eosinophil | 3.24e-12 | 2 |
epidermal cell | 9.69e-11 | 9 |
general ecto-epithelial cell | 3.14e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.29e-23 | 4 |
hemolymphoid system gland | 3.29e-23 | 4 |
thymic region | 3.29e-23 | 4 |
pharyngeal gland | 3.29e-23 | 4 |
thymus primordium | 3.29e-23 | 4 |
pharyngeal epithelium | 7.79e-16 | 6 |
hemopoietic organ | 1.02e-13 | 7 |
immune organ | 1.02e-13 | 7 |
neck | 6.78e-10 | 10 |
gland of gut | 6.78e-10 | 10 |
chordate pharynx | 6.78e-10 | 10 |
pharyngeal region of foregut | 6.78e-10 | 10 |
pharynx | 4.43e-09 | 11 |
entire pharyngeal arch endoderm | 4.43e-09 | 11 |
early pharyngeal endoderm | 4.43e-09 | 11 |
skin epidermis | 8.33e-07 | 15 |
outer epithelium | 8.33e-07 | 15 |
enveloping layer of ectoderm | 8.33e-07 | 15 |