FFCP PHASE1:Hg19::chr1:156642538..156642550,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10763 | |EntrezGene=10763 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=7756 | |HGNC=7756 | ||
|TSSclassifier=strong | |||
|UniProt=P48681 | |UniProt=P48681 | ||
|association_with_transcript=-367bp_to_AB073350_5end | |association_with_transcript=-367bp_to_AB073350_5end | ||
|cluster_id=chr1:156642538..156642550,- | |||
|coexpression_cluster_id=C797 | |||
|description=CAGE_peak_10_at_NES_5end | |description=CAGE_peak_10_at_NES_5end | ||
|id=chr1:156642538..156642550,- | |id=chr1:156642538..156642550,- | ||
|ontology_enrichment_celltype=CL:0000133!2.19e-08!59;CL:0000115!4.61e-08!35;CL:0000540!4.67e-08!6;CL:0000031!4.67e-08!6;CL:0000404!4.67e-08!6;CL:0002139!7.65e-08!24;CL:0000047!7.99e-08!8;CL:0002319!1.02e-07!25;CL:0000071!7.78e-07!18;CL:0002546!7.78e-07!18 | |ontology_enrichment_celltype=CL:0000133!2.19e-08!59;CL:0000115!4.61e-08!35;CL:0000540!4.67e-08!6;CL:0000031!4.67e-08!6;CL:0000404!4.67e-08!6;CL:0002139!7.65e-08!24;CL:0000047!7.99e-08!8;CL:0002319!1.02e-07!25;CL:0000071!7.78e-07!18;CL:0002546!7.78e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002605;6.06e-36;3!CL:0000128;8.29e-16;7!CL:0000126;8.29e-16;7!CL:0000127;8.29e-16;7!CL:0002188;2.58e-10;5!CL:1000746;1.29e-07;7!CL:1000612;1.29e-07;7!CL:0002319;3.18e-07;25!CL:0002363;3.69e-07;2!CL:0002575;3.69e-07;2!CL:0000243;8.00e-07;15!CL:0000125;8.00e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.77e-35,3;CL:0000128,1.31e-15,7;CL:0000126,1.31e-15,7;CL:0000127,1.31e-15,7;CL:0002453,1.31e-15,7;CL:0002188,2.35e-10,5;CL:1000746,1.21e-07,7;CL:1000612,1.21e-07,7;CL:0002319,3.35e-07,25;CL:0002363,4.98e-07,2;CL:0000008,4.98e-07,2;CL:0002575,5.28e-07,2;CL:0000243,9.59e-07,15;CL:0000125,9.59e-07,15;CL:0000030,9.59e-07,15;CL:0000339,9.59e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000008;3.69e-07;2!CL:0000339;8.00e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002203!4.86e-07!6;UBERON:0001768!4.86e-07!6;UBERON:0001986!7.78e-07!18;UBERON:0004638!7.78e-07!18;UBERON:0004852!7.78e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.29e-07;7!UBERON:0001229;1.29e-07;7!UBERON:0003566;3.69e-07;2!UBERON:0001777;3.69e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.21e-07,7;UBERON:0000074,1.21e-07,7;UBERON:0001229,1.21e-07,7;UBERON:0001230,1.21e-07,7;UBERON:0003220,1.21e-07,7;UBERON:0005749,1.21e-07,7;UBERON:0004199,1.21e-07,7;UBERON:0004209,1.21e-07,7;UBERON:0004198,1.21e-07,7;UBERON:0003566,4.98e-07,2;UBERON:0001777,4.98e-07,2;UBERON:0005103,8.60e-07,8;UBERON:0000083,8.60e-07,8;UBERON:0009201,8.60e-07,8;UBERON:0006553,8.60e-07,8;UBERON:0003074,8.60e-07,8;UBERON:0003060,8.60e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0,0,0.626909442956176,1.14494394852423,2.05311637609326,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0.838998872419812,0.275118041940067,0,0.516833518338658,0,0,0.402829317109147,0,0.488124115096339,0.367663080345869,0.81014194788176,0.267899184852239,0.22452937262617,0.225222960966644,0,0,1.64881569537367,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0.404132016209064,0.326923806226917,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0,0.117434498643765,0.161872944368132,0,0,0.61417158655884,0,0,0.494533858557114,0,0,0,0.750711119231785,0,0,0.30648779579902,0,0.226864366320042,0.538168907066586,0,0,0,0,0,0,0,0,0.504867548488229,0,0,0,0.201504196455281,0,0,0,0,0.853815942907168,0.265059536642971,0.580969714347592,0.932949495138334,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0.325808305310325,1.03993478527958,0,0.231860809950154,0,0,0.462985512576611,0.570762456703795,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822619941626588,0.901029173531752,0,0.112131084345361,0,0.22001485746285,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0.508189248444927,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521301686808497,0,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0.519254429183621,0,0.241718899183244,0,0,0,0,0.393373244878272,0,0.0770153371044148,0,0,0,0,1.53084334748864,0.863663664408557,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462145851343933,0.921022048356777,0.689182862422653,0,0.290033387828457,0.255679882248303,1.06838442776085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,1.58510321173008,0,0,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.818149460017238,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0,0.591095237907095,0,0,0,0,0,0,0,0,0,0.183195186803725,0,0,0,0,0.676786981851542,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0.677942222341597,0,0,0,0.195551382734803,0,0,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0.558564802544508,0.916641696046735,0,0.399358000997982,0,0,0.134366944973453,0,0,0,0.164831716762333,0.13480708770837,0,0,0,0.408610218334727,0.321506296930038,0.412618309791701,1.66176135211674,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0.106787412567695,0,0.828478110694391,0,0.197611631897944,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0.454947352624943,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0.302461847526478,0,0,0.159296767163702,0,0.310525913752519,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,1.59238355479446,8.00055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0.107824811396682,0,0.436838552768056,0,0,0,0,0,0,0,0,1.531227386766,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0.992422356778588,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0,0,0,0.347716544605159,0,0,0.17071847709395,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0.397901550322736,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0.286679166302903,0.315543124386369,0,0,0,0.371995018166751,0,0,0.378499274505237,0.655593431782173,0.633492505057185,0.305966489225945,0,0.275684698604535,1.75495277504663,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0.202117188958219,0.435433495793923,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0,0,0.626909442956176,1.14494394852423,2.05311637609326,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0.838998872419812,0.275118041940067,0,0.516833518338658,0,0,0.402829317109147,0,0.488124115096339,0.367663080345869,0.81014194788176,0.267899184852239,0.22452937262617,0.225222960966644,0,0,1.64881569537367,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0.404132016209064,0.326923806226917,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0,0.117434498643765,0.161872944368132,0,0,0.61417158655884,0,0,0.494533858557114,0,0,0,0.750711119231785,0,0,0.30648779579902,0,0.226864366320042,0.538168907066586,0,0,0,0,0,0,0,0,0.504867548488229,0,0,0,0.201504196455281,0,0,0,0,0.853815942907168,0.265059536642971,0.580969714347592,0.932949495138334,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.343135620597051,0,0,0,0,0.325808305310325,1.03993478527958,0,0.231860809950154,0,0,0.462985512576611,0.570762456703795,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.822619941626588,0.901029173531752,0,0.112131084345361,0,0.22001485746285,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0.508189248444927,0,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521301686808497,0,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0.519254429183621,0,0.241718899183244,0,0,0,0,0.393373244878272,0,0.0770153371044148,0,0,0,0,1.53084334748864,0.863663664408557,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462145851343933,0.921022048356777,0.689182862422653,0,0.290033387828457,0.255679882248303,1.06838442776085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,1.58510321173008,0,0,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.818149460017238,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0,0.591095237907095,0,0,0,0,0,0,0,0,0,0.183195186803725,0,0,0,0,0.676786981851542,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0.677942222341597,0,0,0,0.195551382734803,0,0,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0.558564802544508,0.916641696046735,0,0.399358000997982,0,0,0.134366944973453,0,0,0,0.164831716762333,0.13480708770837,0,0,0,0.408610218334727,0.321506296930038,0.412618309791701,1.66176135211674,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0.106787412567695,0,0.828478110694391,0,0.197611631897944,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0.454947352624943,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0.302461847526478,0,0,0.159296767163702,0,0.310525913752519,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,1.59238355479446,8.00055529326307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0.107824811396682,0,0.436838552768056,0,0,0,0,0,0,0,0,1.531227386766,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0.992422356778588,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0,0,0,0,0,0.347716544605159,0,0,0.17071847709395,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0.397901550322736,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0.286679166302903,0.315543124386369,0,0,0,0.371995018166751,0,0,0.378499274505237,0.655593431782173,0.633492505057185,0.305966489225945,0,0.275684698604535,1.75495277504663,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0.202117188958219,0.435433495793923,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p10@NES | |short_description=p10@NES | ||
}} | }} |
Latest revision as of 17:09, 17 September 2015
Short description: | p10@NES |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_NES_5end |
Coexpression cluster: | C797_mesenchymal_skeletal_Endothelial_Pericytes_Skeletal_Astrocyte_left |
Association with transcript: | -367bp_to_AB073350_5end |
EntrezGene: | NES |
HGNC: | 7756 |
UniProt: | P48681 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.77e-35 | 3 |
oligodendrocyte | 1.31e-15 | 7 |
macroglial cell | 1.31e-15 | 7 |
astrocyte | 1.31e-15 | 7 |
oligodendrocyte precursor cell | 1.31e-15 | 7 |
glomerular endothelial cell | 2.35e-10 | 5 |
glomerular cell | 1.21e-07 | 7 |
kidney corpuscule cell | 1.21e-07 | 7 |
neural cell | 3.35e-07 | 25 |
keratocyte | 4.98e-07 | 2 |
migratory cranial neural crest cell | 4.98e-07 | 2 |
central nervous system pericyte | 5.28e-07 | 2 |
glial cell (sensu Vertebrata) | 9.59e-07 | 15 |
glial cell | 9.59e-07 | 15 |
glioblast | 9.59e-07 | 15 |
glioblast (sensu Vertebrata) | 9.59e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.21e-07 | 7 |
renal glomerulus | 1.21e-07 | 7 |
renal corpuscle | 1.21e-07 | 7 |
glomerular capsule | 1.21e-07 | 7 |
metanephric mesenchyme | 1.21e-07 | 7 |
glomerular tuft | 1.21e-07 | 7 |
S-shaped body | 1.21e-07 | 7 |
renal vesicle | 1.21e-07 | 7 |
comma-shaped body | 1.21e-07 | 7 |
head connective tissue | 4.98e-07 | 2 |
substantia propria of cornea | 4.98e-07 | 2 |
mesonephric epithelium | 8.60e-07 | 8 |
mesonephric tubule | 8.60e-07 | 8 |
nephric duct | 8.60e-07 | 8 |
renal duct | 8.60e-07 | 8 |
mesonephric duct | 8.60e-07 | 8 |
pronephric duct | 8.60e-07 | 8 |