FFCP PHASE1:Hg19::chr10:96443204..96443217,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1562 | |EntrezGene=1562 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2620 | |HGNC=2620 | ||
|TSSclassifier=strong | |||
|UniProt=Q4VAT5,P33260,Q7Z348 | |UniProt=Q4VAT5,P33260,Q7Z348 | ||
|association_with_transcript=-33bp_to_ENST00000339022,NM_000772,NM_001128925,uc001kjv.3,uc001kjw.3_5end | |||
|cluster_id=chr10:96443204..96443217,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_CYP2C18_5end | |||
|id=chr10:96443204..96443217,+ | |||
|ontology_enrichment_celltype=CL:0000181!2.62e-10!12;CL:0000417!2.62e-10!12;CL:0000668!2.62e-10!12;CL:0000414!2.62e-10!12;CL:0000412!2.62e-10!12;CL:0000182!2.62e-10!12;CL:0000223!7.13e-09!59;CL:0000313!1.42e-08!1;CL:0000083!2.07e-08!4 | |||
|ontology_enrichment_celltype_v019=CL:0000182;4.63e-13;12!CL:0002178;8.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.73e-13,12;CL:0000223,3.92e-07,58;CL:0002178,8.62e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006242;1.33e-17;1!UBERON:0004161;5.64e-07;11 | |||
|ontology_enrichment_disease=DOID:299!2.38e-10!25;DOID:1799!7.18e-09!1;DOID:10165!7.18e-09!1;DOID:1798!7.18e-09!1;DOID:2152!1.42e-08!1;DOID:178!1.53e-08!1;DOID:326!1.53e-08!1;DOID:3978!1.53e-08!1;DOID:3394!1.53e-08!1;DOID:5844!1.53e-08!1;DOID:1793!2.07e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:1799;1.33e-17;1!DOID:10165;1.33e-17;1!DOID:1798;1.33e-17;1!DOID:3493;1.12e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.70e-17,1;DOID:10165,1.70e-17,1;DOID:1798,1.70e-17,1;DOID:3493,1.12e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0009497!1.72e-10!25;UBERON:0000015!1.72e-10!25;UBERON:0002423!1.72e-10!25;UBERON:0006235!1.72e-10!25;UBERON:0004161!1.72e-10!25;UBERON:0004921!4.59e-10!129;UBERON:0004185!4.59e-10!129;UBERON:0002107!6.83e-10!19;UBERON:0006925!6.83e-10!19;UBERON:0008836!6.83e-10!19;UBERON:0005409!2.19e-09!35;UBERON:0001007!3.31e-09!155;UBERON:0001555!3.31e-09!155;UBERON:0007026!3.31e-09!155;UBERON:0001041!8.41e-09!98;UBERON:0000077!1.20e-08!130;UBERON:0001282!1.32e-08!1;UBERON:0009842!1.32e-08!1;UBERON:0003704!1.32e-08!1;UBERON:0001171!1.32e-08!1;UBERON:0001172!1.32e-08!1;UBERON:0004911!1.42e-08!1;UBERON:0008835!1.64e-08!22;UBERON:0003894!1.64e-08!22;UBERON:0002365!2.83e-08!31;UBERON:0002330!2.83e-08!31;UBERON:0004119!3.35e-08!169;UBERON:0000925!3.35e-08!169;UBERON:0006595!3.35e-08!169;UBERON:0009854!3.92e-08!23;UBERON:0007499!1.83e-07!25;UBERON:0000949!1.91e-07!45;UBERON:0005057!3.63e-07!26;UBERON:0009856!3.63e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;1.26e-16;25!UBERON:0002107;2.36e-14;19!UBERON:0006925;2.36e-14;19!UBERON:0002365;3.33e-09;31!UBERON:0002330;3.33e-09;31!UBERON:0000949;4.38e-09;43!UBERON:0002368;1.74e-07;33!UBERON:0001007;3.72e-07;81!UBERON:0002110;9.91e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,1.24e-16,25;UBERON:0000015,1.24e-16,25;UBERON:0002423,1.24e-16,25;UBERON:0006235,1.24e-16,25;UBERON:0004161,1.24e-16,25;UBERON:0002107,2.37e-14,19;UBERON:0006925,2.37e-14,19;UBERON:0008836,2.37e-14,19;UBERON:0008835,1.92e-12,22;UBERON:0003894,1.92e-12,22;UBERON:0009854,6.47e-12,23;UBERON:0007499,5.48e-11,25;UBERON:0009856,1.41e-10,26;UBERON:0000949,2.99e-09,45;UBERON:0002365,6.47e-09,31;UBERON:0002330,6.47e-09,31;UBERON:0002368,6.32e-08,35;UBERON:0003929,1.01e-07,54;UBERON:0005172,1.01e-07,54;UBERON:0005173,1.01e-07,54;UBERON:0002417,6.05e-07,60;UBERON:0000916,6.05e-07,60;UBERON:0002110,9.64e-07,3;UBERON:0006242,9.64e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,2.94848165003288,13.5881678536723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01859945426117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.33061483573184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.17563783347125,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0.359030577639089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70762395791482,0,2.59362750877391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9224621994178,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04762677792569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82631744101899,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0.223710863595585,0,4.14520944939716,0,0,0,0,0,0,0,0,0,0,0.771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0.359300808426348,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,2.94848165003288,13.5881678536723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.01859945426117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.33061483573184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.17563783347125,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0.359030577639089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70762395791482,0,2.59362750877391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9224621994178,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04762677792569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82631744101899,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0.223710863595585,0,4.14520944939716,0,0,0,0,0,0,0,0,0,0,0.771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0.359300808426348,0,0,0,0,0,0 | ||
|short_description=p3@CYP2C18 | |||
}} | }} |
Latest revision as of 02:28, 20 September 2015
Short description: | p3@CYP2C18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CYP2C18_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -33bp_to_ENST00000339022, NM_000772, NM_001128925, uc001kjv.3, uc001kjw.3_5end |
EntrezGene: | CYP2C18 |
HGNC: | 2620 |
UniProt: | Q4VAT5P33260Q7Z348 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.73e-13 | 12 |
endodermal cell | 3.92e-07 | 58 |
epithelial cell of stomach | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 1.24e-16 | 25 |
anatomical boundary | 1.24e-16 | 25 |
hepatobiliary system | 1.24e-16 | 25 |
foregut-midgut junction | 1.24e-16 | 25 |
septum transversum | 1.24e-16 | 25 |
liver | 2.37e-14 | 19 |
digestive gland | 2.37e-14 | 19 |
liver bud | 2.37e-14 | 19 |
hepatic diverticulum | 1.92e-12 | 22 |
liver primordium | 1.92e-12 | 22 |
digestive tract diverticulum | 6.47e-12 | 23 |
epithelial sac | 5.48e-11 | 25 |
sac | 1.41e-10 | 26 |
endocrine system | 2.99e-09 | 45 |
exocrine gland | 6.47e-09 | 31 |
exocrine system | 6.47e-09 | 31 |
endocrine gland | 6.32e-08 | 35 |
gut epithelium | 1.01e-07 | 54 |
abdomen element | 1.01e-07 | 54 |
abdominal segment element | 1.01e-07 | 54 |
abdominal segment of trunk | 6.05e-07 | 60 |
abdomen | 6.05e-07 | 60 |
gallbladder | 9.64e-07 | 3 |
gall bladder primordium | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.70e-17 | 1 |
endocrine pancreas cancer | 1.70e-17 | 1 |
pancreatic endocrine carcinoma | 1.70e-17 | 1 |
signet ring cell adenocarcinoma | 1.12e-09 | 2 |