FFCP PHASE1:Hg19::chr19:15939841..15939860,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652995 | |EntrezGene=652995 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=37126 | |HGNC=37126 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=84bp_to_ENST00000397381,NR_015379,uc002nbr.3_5end | |association_with_transcript=84bp_to_ENST00000397381,NR_015379,uc002nbr.3_5end | ||
|cluster_id=chr19:15939841..15939860,+ | |||
|coexpression_cluster_id=C3759 | |||
|description=CAGE_peak_2_at_UCA1_5end | |description=CAGE_peak_2_at_UCA1_5end | ||
|id=chr19:15939841..15939860,+ | |id=chr19:15939841..15939860,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.60e-19!254;CL:0002076!1.24e-11!43;CL:0000223!1.93e-10!59;CL:0002251!9.94e-08!21;CL:0002150!1.03e-07!3;CL:0000861!1.03e-07!3;CL:1000507!1.12e-07!12;CL:1000494!1.12e-07!12;CL:0000039!3.32e-07!7;CL:0000586!3.32e-07!7;CL:0000239!4.22e-07!3;CL:1000615!4.22e-07!3;CL:0002306!4.22e-07!3;CL:0002541!5.51e-07!3 | |ontology_enrichment_celltype=CL:0000066!1.60e-19!254;CL:0002076!1.24e-11!43;CL:0000223!1.93e-10!59;CL:0002251!9.94e-08!21;CL:0002150!1.03e-07!3;CL:0000861!1.03e-07!3;CL:1000507!1.12e-07!12;CL:1000494!1.12e-07!12;CL:0000039!3.32e-07!7;CL:0000586!3.32e-07!7;CL:0000239!4.22e-07!3;CL:1000615!4.22e-07!3;CL:0002306!4.22e-07!3;CL:0002541!5.51e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:1000415;1.77e-10;2!CL:1000507;4.56e-08;10!CL:1000494;4.56e-08;10!CL:0000239;1.87e-07;3!CL:1000615;1.87e-07;3!CL:0002306;1.87e-07;3!CL:0002541;4.54e-07;3!CL:1000497;6.01e-07;17!CL:0002518;6.01e-07;17!CL:0002681;9.96e-07;12!CL:0002584;9.96e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.93e-15,253;CL:1000415,1.53e-10,2;CL:1000507,4.78e-08,10;CL:1000494,4.78e-08,10;CL:0000239,1.99e-07,3;CL:1000615,1.99e-07,3;CL:0002306,1.99e-07,3;CL:1000497,5.78e-07,17;CL:0002518,5.78e-07,17;CL:0002541,6.39e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.00e-26!106;DOID:0050687!8.60e-22!143;DOID:162!1.48e-15!235;DOID:14566!6.66e-15!239;DOID:1749!1.37e-11!14;DOID:299!8.84e-10!25 | |ontology_enrichment_disease=DOID:305!2.00e-26!106;DOID:0050687!8.60e-22!143;DOID:162!1.48e-15!235;DOID:14566!6.66e-15!239;DOID:1749!1.37e-11!14;DOID:299!8.84e-10!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.47e-26;14!DOID:299;5.45e-09;25!DOID:305;1.19e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.20e-27,106;DOID:1749,1.43e-26,14;DOID:0050687,2.48e-22,143;DOID:162,3.65e-13,235;DOID:14566,9.46e-13,239;DOID:299,5.26e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0002294!3.10e-11!7;UBERON:0001173!3.10e-11!7;UBERON:0004912!3.10e-11!7;UBERON:0004119!6.48e-10!169;UBERON:0000925!6.48e-10!169;UBERON:0006595!6.48e-10!169;UBERON:0001007!1.67e-09!155;UBERON:0001555!1.67e-09!155;UBERON:0007026!1.67e-09!155;UBERON:0001737!3.22e-09!9;UBERON:0006554!5.15e-09!44;UBERON:0000058!5.29e-09!26;UBERON:0001008!1.02e-08!45;UBERON:0000077!1.85e-08!130;UBERON:0000344!4.71e-08!12;UBERON:0003886!7.90e-08!63;UBERON:0009773!1.12e-07!12;UBERON:0001231!1.12e-07!12;UBERON:0004810!1.12e-07!12;UBERON:0004921!1.25e-07!129;UBERON:0004185!1.25e-07!129;UBERON:0003064!2.43e-07!37;UBERON:0005156!2.77e-07!59;UBERON:0000990!2.77e-07!59;UBERON:0002110!3.89e-07!3;UBERON:0006242!3.89e-07!3;UBERON:0006853!4.22e-07!3;UBERON:0007685!4.22e-07!3;UBERON:0004134!4.22e-07!3;UBERON:0000476!5.51e-07!3;UBERON:0000920!5.51e-07!3;UBERON:0000489!9.94e-07!32 | |ontology_enrichment_uberon=UBERON:0002294!3.10e-11!7;UBERON:0001173!3.10e-11!7;UBERON:0004912!3.10e-11!7;UBERON:0004119!6.48e-10!169;UBERON:0000925!6.48e-10!169;UBERON:0006595!6.48e-10!169;UBERON:0001007!1.67e-09!155;UBERON:0001555!1.67e-09!155;UBERON:0007026!1.67e-09!155;UBERON:0001737!3.22e-09!9;UBERON:0006554!5.15e-09!44;UBERON:0000058!5.29e-09!26;UBERON:0001008!1.02e-08!45;UBERON:0000077!1.85e-08!130;UBERON:0000344!4.71e-08!12;UBERON:0003886!7.90e-08!63;UBERON:0009773!1.12e-07!12;UBERON:0001231!1.12e-07!12;UBERON:0004810!1.12e-07!12;UBERON:0004921!1.25e-07!129;UBERON:0004185!1.25e-07!129;UBERON:0003064!2.43e-07!37;UBERON:0005156!2.77e-07!59;UBERON:0000990!2.77e-07!59;UBERON:0002110!3.89e-07!3;UBERON:0006242!3.89e-07!3;UBERON:0006853!4.22e-07!3;UBERON:0007685!4.22e-07!3;UBERON:0004134!4.22e-07!3;UBERON:0000476!5.51e-07!3;UBERON:0000920!5.51e-07!3;UBERON:0000489!9.94e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0002294;1.61e-17;7!UBERON:0001173;1.61e-17;7!UBERON:0002394;4.83e-12;4!UBERON:0003928;4.83e-12;4!UBERON:0003343;2.80e-11;4!UBERON:0004785;2.80e-11;4!UBERON:0000344;3.55e-08;20!UBERON:0004211;4.56e-08;10!UBERON:0009773;4.56e-08;10!UBERON:0001231;4.56e-08;10!UBERON:0004810;4.56e-08;10!UBERON:0000974;1.14e-07;6!UBERON:0006853;1.87e-07;3!UBERON:0007685;1.87e-07;3!UBERON:0004134;1.87e-07;3!UBERON:0000489;2.50e-07;29!UBERON:0002110;2.92e-07;3!UBERON:0003124;4.54e-07;3!UBERON:0000920;4.54e-07;3!UBERON:0006554;4.71e-07;30!UBERON:0001008;4.71e-07;30!UBERON:0000474;6.74e-07;37!UBERON:0001225;9.96e-07;12!UBERON:0008987;9.96e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002294,1.37e-13,9;UBERON:0001173,1.37e-13,9;UBERON:0004912,1.37e-13,9;UBERON:0003343,2.61e-11,4;UBERON:0004785,2.61e-11,4;UBERON:0002394,3.75e-08,6;UBERON:0003928,3.75e-08,6;UBERON:0000344,3.77e-08,20;UBERON:0004810,4.78e-08,10;UBERON:0006853,1.99e-07,3;UBERON:0007685,1.99e-07,3;UBERON:0004134,1.99e-07,3;UBERON:0002110,2.66e-07,3;UBERON:0006242,2.66e-07,3;UBERON:0003134,3.85e-07,37;UBERON:0000474,3.85e-07,37;UBERON:0000920,6.39e-07,3;UBERON:0000489,8.24e-07,31;UBERON:0006554,9.56e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.591534000199219,0.168584690078102,0.241011029883482,0.110293972732394,0.871517776369625,0.474541238222193,0,0.392442930250692,0,0,0,0,0,1.26755034821831,0,0,0,1.10689594688802,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0.290633938513962,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0.200506470303285,0.276242966807689,0,0,0,5.41439535488894,2.31046011313244,0,0,0.211103257785751,0,0,0,0,0,0.501689773854853,2.29388645740534,2.49322802678617,0.447749509444357,0.219259876645935,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,1.38871292465715,0,8.82144777531714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12249601539763,2.32727527078292,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0.153900517007594,0,1.84451123510448,0.718061155278177,1.4124158349861,1.27600463892768,0.915975934018623,1.06606955203727,0,0,0.166211681900156,0.676786981851542,0.588187602953219,0.839107934879214,0,0,0,17.9556088975062,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,2.15231080825299,0.728341138602278,0,0,0,0,0,0,0,0,0,0,1.99226682220855,0,0,1.7638631534588,4.26590112243973,0.34945333648406,0,4.06376591414158,2.99666200053361,3.20250282507516,0.193978032976839,0,0,0,0,0,1.36885967914362,2.88571752905521,0.640358984218058,0.39961921916426,0,0,0,0,0,0.471388069233591,0.271808412147228,0.313808538937,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72723677587501,0,0,0,0,0,0,0,0,0,0.453248366080503,0,0,0,0,0,8.45778026780006,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680117776536817,0.231522474323834,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0,5.28280308396568,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6129427695482,1.29766695682514,0,1.5018336599544,0,0,0,0,0,0,0,0,13.3070477595341,0,0,0,0,0,0,0,0,1.14986184875636,0,0,0,0,1.68534503309014,0,0,0,0,0,0,0.313972371402056,0,11.7714308591791,0,1.72742072974897,0,0,0,0,0,0,0,0,0,0,0,0,0,6.64409918777745,0.31020638566432,0,2.01339777236026,0.883352102537187,0.853425474875886,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,2.82315897372553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509944148709909,0,0,0.50141507858475,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,8.79155300998525,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.591534000199219,0.168584690078102,0.241011029883482,0.110293972732394,0.871517776369625,0.474541238222193,0,0.392442930250692,0,0,0,0,0,1.26755034821831,0,0,0,1.10689594688802,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0.290633938513962,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0.200506470303285,0.276242966807689,0,0,0,5.41439535488894,2.31046011313244,0,0,0.211103257785751,0,0,0,0,0,0.501689773854853,2.29388645740534,2.49322802678617,0.447749509444357,0.219259876645935,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,1.38871292465715,0,8.82144777531714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.95497793895076,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12249601539763,2.32727527078292,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25481369850743,0.153900517007594,0,1.84451123510448,0.718061155278177,1.4124158349861,1.27600463892768,0.915975934018623,1.06606955203727,0,0,0.166211681900156,0.676786981851542,0.588187602953219,0.839107934879214,0,0,0,17.9556088975062,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,2.15231080825299,0.728341138602278,0,0,0,0,0,0,0,0,0,0,1.99226682220855,0,0,1.7638631534588,4.26590112243973,0.34945333648406,0,4.06376591414158,2.99666200053361,3.20250282507516,0.193978032976839,0,0,0,0,0,1.36885967914362,2.88571752905521,0.640358984218058,0.39961921916426,0,0,0,0,0,0.471388069233591,0.271808412147228,0.313808538937,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72723677587501,0,0,0,0,0,0,0,0,0,0.453248366080503,0,0,0,0,0,8.45778026780006,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680117776536817,0.231522474323834,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0,5.28280308396568,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6129427695482,1.29766695682514,0,1.5018336599544,0,0,0,0,0,0,0,0,13.3070477595341,0,0,0,0,0,0,0,0,1.14986184875636,0,0,0,0,1.68534503309014,0,0,0,0,0,0,0.313972371402056,0,11.7714308591791,0,1.72742072974897,0,0,0,0,0,0,0,0,0,0,0,0,0,6.64409918777745,0.31020638566432,0,2.01339777236026,0.883352102537187,0.853425474875886,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,2.82315897372553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509944148709909,0,0,0.50141507858475,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,8.79155300998525,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | ||
|short_description=p2@UCA1 | |short_description=p2@UCA1 | ||
}} | }} |
Latest revision as of 08:33, 16 September 2015
Short description: | p2@UCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_UCA1_5end |
Coexpression cluster: | C3759_papillotubular_clear_epidermoid_acantholytic_transitionalcell_rectal_mucinous |
Association with transcript: | 84bp_to_ENST00000397381, NR_015379, uc002nbr.3_5end |
EntrezGene: | UCA1 |
HGNC: | 37126 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.93e-15 | 253 |
epithelial cell of gall bladder | 1.53e-10 | 2 |
kidney tubule cell | 4.78e-08 | 10 |
nephron tubule epithelial cell | 4.78e-08 | 10 |
brush border epithelial cell | 1.99e-07 | 3 |
kidney cortex tubule cell | 1.99e-07 | 3 |
epithelial cell of proximal tubule | 1.99e-07 | 3 |
kidney cell | 5.78e-07 | 17 |
kidney epithelial cell | 5.78e-07 | 17 |
chorionic membrane mesenchymal stem cell | 6.39e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
biliary system | 1.37e-13 | 9 |
biliary tree | 1.37e-13 | 9 |
biliary bud | 1.37e-13 | 9 |
mucosa of oral region | 2.61e-11 | 4 |
respiratory system mucosa | 2.61e-11 | 4 |
bile duct | 3.75e-08 | 6 |
digestive system duct | 3.75e-08 | 6 |
mucosa | 3.77e-08 | 20 |
nephron tubule epithelium | 4.78e-08 | 10 |
renal cortex tubule | 1.99e-07 | 3 |
region of nephron tubule | 1.99e-07 | 3 |
proximal tubule | 1.99e-07 | 3 |
gallbladder | 2.66e-07 | 3 |
gall bladder primordium | 2.66e-07 | 3 |
female reproductive organ | 3.85e-07 | 37 |
female reproductive system | 3.85e-07 | 37 |
egg chorion | 6.39e-07 | 3 |
cavitated compound organ | 8.24e-07 | 31 |
urinary system structure | 9.56e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.20e-27 | 106 |
squamous cell carcinoma | 1.43e-26 | 14 |
cell type cancer | 2.48e-22 | 143 |
cancer | 3.65e-13 | 235 |
disease of cellular proliferation | 9.46e-13 | 239 |
adenocarcinoma | 5.26e-09 | 25 |