FFCP PHASE1:Hg19::chr3:115509908..115509919,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:115509908..115509919,+ | |||
|description=CAGE_peak_at_chr3:115509908..115509919,+ | |description=CAGE_peak_at_chr3:115509908..115509919,+ | ||
|id=chr3:115509908..115509919,+ | |id=chr3:115509908..115509919,+ | ||
|ontology_enrichment_celltype=CL:0000243!9.46e-13!15;CL:0000125!9.46e-13!15;CL:0000030!9.46e-13!15;CL:0000339!9.46e-13!15;CL:0000095!3.93e-11!17;CL:0000123!3.93e-11!17;CL:0002319!1.64e-08!25;CL:0000128!2.28e-07!7;CL:0000126!2.28e-07!7;CL:0000127!2.28e-07!7;CL:0002453!2.28e-07!7;CL:0000133!3.09e-07!59;CL:0000333!3.43e-07!41;CL:0002150!8.74e-07!3;CL:0000861!8.74e-07!3 | |ontology_enrichment_celltype=CL:0000243!9.46e-13!15;CL:0000125!9.46e-13!15;CL:0000030!9.46e-13!15;CL:0000339!9.46e-13!15;CL:0000095!3.93e-11!17;CL:0000123!3.93e-11!17;CL:0002319!1.64e-08!25;CL:0000128!2.28e-07!7;CL:0000126!2.28e-07!7;CL:0000127!2.28e-07!7;CL:0002453!2.28e-07!7;CL:0000133!3.09e-07!59;CL:0000333!3.43e-07!41;CL:0002150!8.74e-07!3;CL:0000861!8.74e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000319;6.42e-13;1!CL:0000159;4.29e-07;2!CL:0000243;9.40e-07;15!CL:0000125;9.40e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,4.77e-13,1;CL:0000159,3.70e-07,2;CL:0000243,8.85e-07,15;CL:0000125,8.85e-07,15;CL:0000030,8.85e-07,15;CL:0000339,8.85e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006238;3.67e-10;10!UBERON:0009497;8.30e-09;13!UBERON:0008814;4.29e-07;2!UBERON:0010056;4.29e-07;2!CL:0000339;9.40e-07;15 | |||
|ontology_enrichment_disease=DOID:305!1.11e-11!106;DOID:14566!2.09e-08!239;DOID:162!9.26e-08!235;DOID:17!2.98e-07!5;DOID:450!2.98e-07!5;DOID:66!2.98e-07!5;DOID:423!2.98e-07!5;DOID:0080000!2.98e-07!5;DOID:11722!2.98e-07!5;DOID:7!3.02e-07!39;DOID:299!4.87e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:5662;1.71e-13;1!DOID:3111;2.62e-13;1!DOID:3603;2.62e-13;1!DOID:3030;6.42e-13;1!DOID:3347;6.42e-13;1!DOID:3093;2.33e-09;11!DOID:299;7.52e-08;25!DOID:4929;2.22e-07;2!DOID:3493;2.74e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,1.61e-13,1;DOID:3111,2.62e-13,1;DOID:3603,2.62e-13,1;DOID:3030,4.77e-13,1;DOID:3347,6.06e-13,1;DOID:3093,2.13e-09,11;DOID:305,5.71e-08,106;DOID:299,7.38e-08,25;DOID:4929,2.28e-07,2;DOID:3493,2.91e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002294!1.96e-08!7;UBERON:0001173!1.96e-08!7;UBERON:0004912!1.96e-08!7;UBERON:0001048!8.87e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0002394;2.89e-27;4!UBERON:0003928;2.89e-27;4!UBERON:0002294;7.14e-16;7!UBERON:0001173;7.14e-16;7!UBERON:0004913;1.71e-13;1!UBERON:0003703;1.71e-13;1!UBERON:0001174;1.71e-13;1!UBERON:0004914;1.71e-13;1!UBERON:0000058;2.74e-11;10!UBERON:0002423;7.05e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,1.73e-18,6;UBERON:0003928,1.73e-18,6;UBERON:0004913,1.82e-13,1;UBERON:0003703,1.82e-13,1;UBERON:0001174,1.82e-13,1;UBERON:0004914,1.82e-13,1;UBERON:0002294,1.57e-12,9;UBERON:0001173,1.57e-12,9;UBERON:0004912,1.57e-12,9;UBERON:0008835,5.84e-09,22;UBERON:0003894,5.84e-09,22;UBERON:0009854,1.41e-08,23;UBERON:0007499,6.62e-08,25;UBERON:0009497,6.62e-08,25;UBERON:0000015,6.62e-08,25;UBERON:0002423,6.62e-08,25;UBERON:0006235,6.62e-08,25;UBERON:0004161,6.62e-08,25;UBERON:0009856,1.32e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0.900273288253207,0.721367704669072,0,0,0.675105328965065,0,0,0.0920498986422993,0,0.355009592516614,0.10075209822764,0,0,0,0.286804595389004,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.462092022626489,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,0,0,0,0,0,0,0,0,0,2.65898574505602,0,0,2.78591888556713,1.61119057208048,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0.150323419414493,0,0,0.330991955875499,0.313932918407225,0,0,0,0,0.391969589657511,0.174118413160805,0,0,0.483781656445426,0.146178634172371,0.328461828212837,0,0,0,0,0.19871461170299,0,0,0.881747022766871,0.426905989478705,0,0.288180834308212,0,0,0,0.621262677827163,0,0.407712618220842,1.255234155748,0,1.73370353940911,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.298509605773748,0,0,0,0.251567901752575,0,0,0.151230923763239,1.08806040407946,0.147855149989634,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0.303859956177382,0,0,0,0,0,1.72041036127604,2.3244333569449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,1.84841065840541,0,1.3807198521202,0,0,0,0,0,0.163771917510097,3.69640215542613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94422421706063,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0,0.22910686854405,0.93061915699296,0.955538938977433,0,2.15930513953535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0.462175628631418,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,2.13050538903166,0,0,0,0,0,0,0,0.0814032686109745,0.853818767021724,0,0.898252021065869,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0.410623275218653,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0.560677600142307,1.06748995729705,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0.213557388818567,0,0.900273288253207,0.721367704669072,0,0,0.675105328965065,0,0,0.0920498986422993,0,0.355009592516614,0.10075209822764,0,0,0,0.286804595389004,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0.462092022626489,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,0,0,0,0,0,0,0,0,0,2.65898574505602,0,0,2.78591888556713,1.61119057208048,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0.150323419414493,0,0,0.330991955875499,0.313932918407225,0,0,0,0,0.391969589657511,0.174118413160805,0,0,0.483781656445426,0.146178634172371,0.328461828212837,0,0,0,0,0.19871461170299,0,0,0.881747022766871,0.426905989478705,0,0.288180834308212,0,0,0,0.621262677827163,0,0.407712618220842,1.255234155748,0,1.73370353940911,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.298509605773748,0,0,0,0.251567901752575,0,0,0.151230923763239,1.08806040407946,0.147855149989634,0,0,0.155262956876259,0.414706207840855,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0.219284049578707,0,0,0,0,0,0.303859956177382,0,0,0,0,0,1.72041036127604,2.3244333569449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0,0,1.84841065840541,0,1.3807198521202,0,0,0,0,0,0.163771917510097,3.69640215542613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94422421706063,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0.170426809518315,0,0.22910686854405,0.93061915699296,0.955538938977433,0,2.15930513953535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,0.462175628631418,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,2.13050538903166,0,0,0,0,0,0,0,0.0814032686109745,0.853818767021724,0,0.898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr3:115509908..115509919,+ | |short_description=p@chr3:115509908..115509919,+ | ||
}} | }} |
Latest revision as of 14:36, 29 July 2015
Short description: | p@chr3:115509908..115509919, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:115509908..115509919, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 4.77e-13 | 1 |
seromucus secreting cell | 3.70e-07 | 2 |
glial cell (sensu Vertebrata) | 8.85e-07 | 15 |
glial cell | 8.85e-07 | 15 |
glioblast | 8.85e-07 | 15 |
glioblast (sensu Vertebrata) | 8.85e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
bile duct | 1.73e-18 | 6 |
digestive system duct | 1.73e-18 | 6 |
hepatopancreatic ampulla | 1.82e-13 | 1 |
extrahepatic bile duct | 1.82e-13 | 1 |
common bile duct | 1.82e-13 | 1 |
duodenal papilla | 1.82e-13 | 1 |
biliary system | 1.57e-12 | 9 |
biliary tree | 1.57e-12 | 9 |
biliary bud | 1.57e-12 | 9 |
hepatic diverticulum | 5.84e-09 | 22 |
liver primordium | 5.84e-09 | 22 |
digestive tract diverticulum | 1.41e-08 | 23 |
epithelial sac | 6.62e-08 | 25 |
epithelium of foregut-midgut junction | 6.62e-08 | 25 |
anatomical boundary | 6.62e-08 | 25 |
hepatobiliary system | 6.62e-08 | 25 |
foregut-midgut junction | 6.62e-08 | 25 |
septum transversum | 6.62e-08 | 25 |
sac | 1.32e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 1.61e-13 | 1 |
cystadenocarcinoma | 2.62e-13 | 1 |
mucinous cystadenocarcinoma | 2.62e-13 | 1 |
mucinous adenocarcinoma | 4.77e-13 | 1 |
osteosarcoma | 6.06e-13 | 1 |
nervous system cancer | 2.13e-09 | 11 |
carcinoma | 5.71e-08 | 106 |
adenocarcinoma | 7.38e-08 | 25 |
tubular adenocarcinoma | 2.28e-07 | 2 |
signet ring cell adenocarcinoma | 2.91e-07 | 2 |