FFCP PHASE1:Hg19::chr12:13248705..13248710,-: Difference between revisions
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|id=chr12:13248705..13248710,-
|short_description=p6@GSG1
|description=CAGE_peak_6_at_GSG1_5end
|association_with_transcript=0bp_to_ENST00000396310,ENST00000405543,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=83445 | |EntrezGene=83445 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19716 | |HGNC=19716 | ||
|TSSclassifier=strong | |||
|UniProt=F8W8T6,C9JIV8 | |UniProt=F8W8T6,C9JIV8 | ||
|association_with_transcript=0bp_to_ENST00000396310,ENST00000405543,uc001rbj.2,uc001rbk.2,uc001rbl.2,uc001rbm.2_5end | |||
|cluster_id=chr12:13248705..13248710,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_6_at_GSG1_5end | |||
|id=chr12:13248705..13248710,- | |||
|ontology_enrichment_celltype=CL:0002598!8.58e-14!1;CL:0002617!1.64e-07!2 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;9.46e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!1.29e-26!2;UBERON:0002757!1.29e-26!2;UBERON:0010134!1.29e-26!2;UBERON:0002784!1.29e-26!2;UBERON:0005408!1.29e-26!2;UBERON:0001899!1.29e-26!2;UBERON:0003296!8.06e-14!4;UBERON:0010133!8.06e-14!4;UBERON:0000966!4.33e-11!5;UBERON:0005388!4.33e-11!5;UBERON:0001802!4.33e-11!5;UBERON:0001894!2.78e-08!7;UBERON:0006222!2.78e-08!7;UBERON:0002360!1.12e-07!2;UBERON:0000094!1.12e-07!2;UBERON:0007645!1.12e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;5.68e-99;2!UBERON:0002757;5.68e-99;2!UBERON:0010134;5.68e-99;2!UBERON:0005408;5.68e-99;2!UBERON:0001899;5.68e-99;2!UBERON:0003296;3.11e-50;4!UBERON:0010133;3.11e-50;4!UBERON:0002784;3.11e-50;4!UBERON:0001894;2.74e-29;7!UBERON:0002360;9.18e-26;2!UBERON:0000094;9.18e-26;2!UBERON:0010743;9.18e-26;2!UBERON:0000966;3.26e-11;5!UBERON:0005388;3.26e-11;5!UBERON:0001802;3.26e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.68e-99,2;UBERON:0002757,5.68e-99,2;UBERON:0010134,5.68e-99,2;UBERON:0005408,5.68e-99,2;UBERON:0001899,5.68e-99,2;UBERON:0003296,3.11e-50,4;UBERON:0010133,3.11e-50,4;UBERON:0002784,3.11e-50,4;UBERON:0001894,2.74e-29,7;UBERON:0006222,2.74e-29,7;UBERON:0002360,9.18e-26,2;UBERON:0000094,9.18e-26,2;UBERON:0010743,9.18e-26,2;UBERON:0001017,2.17e-10,81;UBERON:0000966,1.44e-09,6;UBERON:0005388,1.44e-09,6;UBERON:0001802,1.44e-09,6;UBERON:0001016,1.88e-09,89;UBERON:0003056,4.28e-08,61;UBERON:0000955,2.91e-07,68;UBERON:0006238,2.91e-07,68;UBERON:0002368,9.98e-07,35 | |||
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|short_description=p6@GSG1 | |||
}} | }} |
Latest revision as of 09:54, 17 September 2015
Short description: | p6@GSG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GSG1_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000396310, ENST00000405543, uc001rbj.2, uc001rbk.2, uc001rbl.2, uc001rbm.2_5end |
EntrezGene: | GSG1 |
HGNC: | 19716 |
UniProt: | F8W8T6C9JIV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 5.68e-99 | 2 |
regional part of epithalamus | 5.68e-99 | 2 |
secretory circumventricular organ | 5.68e-99 | 2 |
circumventricular organ | 5.68e-99 | 2 |
epithalamus | 5.68e-99 | 2 |
gland of diencephalon | 3.11e-50 | 4 |
neuroendocrine gland | 3.11e-50 | 4 |
regional part of diencephalon | 3.11e-50 | 4 |
diencephalon | 2.74e-29 | 7 |
future diencephalon | 2.74e-29 | 7 |
meninx | 9.18e-26 | 2 |
membrane organ | 9.18e-26 | 2 |
meningeal cluster | 9.18e-26 | 2 |
central nervous system | 2.17e-10 | 81 |
retina | 1.44e-09 | 6 |
photoreceptor array | 1.44e-09 | 6 |
posterior segment of eyeball | 1.44e-09 | 6 |
nervous system | 1.88e-09 | 89 |
pre-chordal neural plate | 4.28e-08 | 61 |
brain | 2.91e-07 | 68 |
future brain | 2.91e-07 | 68 |
endocrine gland | 9.98e-07 | 35 |