FFCP PHASE1:Hg19::chr3:149193560..149193572,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7104 | |EntrezGene=7104 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11856 | |HGNC=11856 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000463068_5end | |association_with_transcript=0bp_to_ENST00000463068_5end | ||
|cluster_id=chr3:149193560..149193572,+ | |||
|coexpression_cluster_id=C3631 | |||
|description=CAGE_peak_3_at_TM4SF4_5end | |description=CAGE_peak_3_at_TM4SF4_5end | ||
|id=chr3:149193560..149193572,+ | |id=chr3:149193560..149193572,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009497;1.53e-20;13!UBERON:0006242;1.12e-17;1!UBERON:0004161;4.04e-14;11!UBERON:0001041;3.79e-09;30 | |||
|ontology_enrichment_disease=DOID:4468!1.10e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:3493;7.98e-10;2!DOID:4468;1.64e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,7.98e-10,2;DOID:4468,1.33e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0009497!1.92e-12!25;UBERON:0000015!1.92e-12!25;UBERON:0002423!1.92e-12!25;UBERON:0006235!1.92e-12!25;UBERON:0004161!1.92e-12!25;UBERON:0008835!2.36e-11!22;UBERON:0003894!2.36e-11!22;UBERON:0009854!8.46e-11!23;UBERON:0005911!1.64e-10!82;UBERON:0002107!2.88e-10!19;UBERON:0006925!2.88e-10!19;UBERON:0008836!2.88e-10!19;UBERON:0003929!3.84e-10!54;UBERON:0007499!7.98e-10!25;UBERON:0009856!2.15e-09!26;UBERON:0002368!4.16e-08!35;UBERON:0000949!2.13e-07!45;UBERON:0005057!3.20e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;1.58e-23;25!UBERON:0007195;1.12e-17;1!UBERON:0002107;2.72e-14;19!UBERON:0006925;2.72e-14;19!UBERON:0002294;2.58e-10;7!UBERON:0001173;2.58e-10;7!UBERON:0002365;8.37e-09;31!UBERON:0002330;8.37e-09;31!UBERON:0002368;1.77e-07;33!UBERON:0002110;9.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009497,1.71e-23,25;UBERON:0000015,1.71e-23,25;UBERON:0002423,1.71e-23,25;UBERON:0006235,1.71e-23,25;UBERON:0004161,1.71e-23,25;UBERON:0008835,8.11e-19,22;UBERON:0003894,8.11e-19,22;UBERON:0009854,5.26e-18,23;UBERON:0007195,1.03e-17,1;UBERON:0007499,1.42e-16,25;UBERON:0009856,6.08e-16,26;UBERON:0002107,2.72e-14,19;UBERON:0006925,2.72e-14,19;UBERON:0008836,2.72e-14,19;UBERON:0003929,8.32e-11,54;UBERON:0005911,1.79e-09,82;UBERON:0002365,7.03e-09,31;UBERON:0002330,7.03e-09,31;UBERON:0002294,3.42e-08,9;UBERON:0001173,3.42e-08,9;UBERON:0004912,3.42e-08,9;UBERON:0002368,6.80e-08,35;UBERON:0005172,1.09e-07,54;UBERON:0005173,1.09e-07,54;UBERON:0002417,6.46e-07,60;UBERON:0000916,6.46e-07,60 | |||
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| ||
|short_description=p3@TM4SF4 | |short_description=p3@TM4SF4 | ||
}} | }} |
Latest revision as of 21:36, 15 September 2015
Short description: | p3@TM4SF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TM4SF4_5end |
Coexpression cluster: | C3631_signet_liver_Hepatocyte_lung_gastrointestinal_duodenum_gall |
Association with transcript: | 0bp_to_ENST00000463068_5end |
EntrezGene: | TM4SF4 |
HGNC: | 11856 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelium of foregut-midgut junction | 1.71e-23 | 25 |
anatomical boundary | 1.71e-23 | 25 |
hepatobiliary system | 1.71e-23 | 25 |
foregut-midgut junction | 1.71e-23 | 25 |
septum transversum | 1.71e-23 | 25 |
hepatic diverticulum | 8.11e-19 | 22 |
liver primordium | 8.11e-19 | 22 |
digestive tract diverticulum | 5.26e-18 | 23 |
stroma of bone marrow | 1.03e-17 | 1 |
epithelial sac | 1.42e-16 | 25 |
sac | 6.08e-16 | 26 |
liver | 2.72e-14 | 19 |
digestive gland | 2.72e-14 | 19 |
liver bud | 2.72e-14 | 19 |
gut epithelium | 8.32e-11 | 54 |
endo-epithelium | 1.79e-09 | 82 |
exocrine gland | 7.03e-09 | 31 |
exocrine system | 7.03e-09 | 31 |
biliary system | 3.42e-08 | 9 |
biliary tree | 3.42e-08 | 9 |
biliary bud | 3.42e-08 | 9 |
endocrine gland | 6.80e-08 | 35 |
abdomen element | 1.09e-07 | 54 |
abdominal segment element | 1.09e-07 | 54 |
abdominal segment of trunk | 6.46e-07 | 60 |
abdomen | 6.46e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 7.98e-10 | 2 |
clear cell adenocarcinoma | 1.33e-09 | 2 |