FFCP PHASE1:Hg19::chr1:113250450..113250457,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389 | |EntrezGene=389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=669 | |HGNC=669 | ||
|TSSclassifier=strong | |||
|UniProt=P08134 | |UniProt=P08134 | ||
|association_with_transcript=-394bp_to_ENST00000369642_5end | |association_with_transcript=-394bp_to_ENST00000369642_5end | ||
|cluster_id=chr1:113250450..113250457,- | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_18_at_RHOC_5end | |description=CAGE_peak_18_at_RHOC_5end | ||
|id=chr1:113250450..113250457,- | |id=chr1:113250450..113250457,- | ||
|ontology_enrichment_celltype=CL:0000317!1.40e-10!2;CL:1000448!1.40e-10!2;CL:0002308!1.40e-10!2;CL:0002140!1.40e-10!2;CL:0002159!2.11e-08!13;CL:0000239!6.76e-07!3;CL:1000615!6.76e-07!3;CL:0002306!6.76e-07!3 | |ontology_enrichment_celltype=CL:0000317!1.40e-10!2;CL:1000448!1.40e-10!2;CL:0002308!1.40e-10!2;CL:0002140!1.40e-10!2;CL:0002159!2.11e-08!13;CL:0000239!6.76e-07!3;CL:1000615!6.76e-07!3;CL:0002306!6.76e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000138;4.27e-34;6!CL:0000153;2.62e-23;9!CL:0000447;2.62e-23;9!CL:0000327;1.22e-14;15!CL:0000499;1.52e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,4.27e-34,6;CL:0000138,4.27e-34,6;CL:0000153,2.62e-23,9;CL:0000447,2.62e-23,9;CL:0000327,1.22e-14,15;CL:0000499,1.52e-08,28;CL:0000151,5.81e-07,36 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;5.42e-195;1!DOID:4549;5.42e-195;1!DOID:5861;5.42e-195;1!DOID:6496;5.42e-195;1!DOID:201;4.27e-34;6!DOID:0060100;4.27e-34;6!DOID:1115;2.29e-11;20 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,5.42e-195,1;DOID:4549,5.42e-195,1;DOID:5861,5.42e-195,1;DOID:6496,5.42e-195,1;DOID:201,4.27e-34,6;DOID:0060100,4.27e-34,6;DOID:1115,2.29e-11,20 | |||
|ontology_enrichment_uberon=UBERON:0002419!1.40e-10!2;UBERON:0007771!1.40e-10!2;UBERON:0003297!1.40e-10!2;UBERON:0001821!1.40e-10!2;UBERON:0003487!1.40e-10!2;UBERON:0001820!1.40e-10!2;UBERON:0005089!1.40e-10!2;UBERON:0005088!1.40e-10!2;UBERON:0006853!6.76e-07!3;UBERON:0007685!6.76e-07!3;UBERON:0004134!6.76e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.39e-66;3!UBERON:0004755;2.39e-66;3!UBERON:0001474;1.85e-12;18!UBERON:0004765;4.34e-09;26!UBERON:0001434;2.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.39e-66,3;UBERON:0004755,2.39e-66,3 | |||
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| ||
|short_description=p18@RHOC | |short_description=p18@RHOC | ||
}} | }} |
Latest revision as of 05:09, 16 September 2015
Short description: | p18@RHOC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_RHOC_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -394bp_to_ENST00000369642_5end |
EntrezGene: | RHOC |
HGNC: | 669 |
UniProt: | P08134 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 4.27e-34 | 6 |
chondrocyte | 4.27e-34 | 6 |
GAG secreting cell | 2.62e-23 | 9 |
carbohydrate secreting cell | 2.62e-23 | 9 |
extracellular matrix secreting cell | 1.22e-14 | 15 |
stromal cell | 1.52e-08 | 28 |
secretory cell | 5.81e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.39e-66 | 3 |
skeletal tissue | 2.39e-66 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 5.42e-195 | 1 |
extraosseous chondrosarcoma | 5.42e-195 | 1 |
myxoid chondrosarcoma | 5.42e-195 | 1 |
extraskeletal myxoid chondrosarcoma | 5.42e-195 | 1 |
connective tissue cancer | 4.27e-34 | 6 |
musculoskeletal system cancer | 4.27e-34 | 6 |
sarcoma | 2.29e-11 | 20 |