FFCP PHASE1:Hg19::chr12:47473298..47473334,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:47473298..47473334,-
|short_description=p2@AMIGO2
|description=CAGE_peak_2_at_AMIGO2_5end
|association_with_transcript=90bp_to_ENST00000550413_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=347902 | |EntrezGene=347902 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24073 | |HGNC=24073 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=90bp_to_ENST00000550413_5end | |||
|cluster_id=chr12:47473298..47473334,- | |||
|description=CAGE_peak_2_at_AMIGO2_5end | |||
|id=chr12:47473298..47473334,- | |||
|ontology_enrichment_celltype=CL:0000066!2.37e-11!254;CL:0002076!1.05e-09!43;CL:0000359!1.04e-08!32;CL:0000220!7.28e-07!246;CL:0000192!8.78e-07!42;CL:0000514!8.78e-07!42;CL:0000223!9.31e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.07e-09;32!CL:0002076;1.82e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.83e-11,253;CL:0002076,9.65e-11,42;CL:0000359,1.99e-09,32;CL:0000223,2.61e-08,58;CL:0000192,4.84e-07,43;CL:0000514,4.84e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:120!3.89e-08!27;DOID:193!9.77e-08!29;DOID:2394!7.73e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:120;8.08e-09;27!DOID:193;2.59e-08;29!DOID:2394;2.86e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,7.85e-09,27;DOID:193,2.31e-08,29;DOID:2394,3.66e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002100!5.64e-10!216;UBERON:0003914!2.48e-09!118;UBERON:0001637!1.34e-08!42;UBERON:0003509!1.34e-08!42;UBERON:0004572!1.34e-08!42;UBERON:0004119!3.11e-08!169;UBERON:0000925!3.11e-08!169;UBERON:0006595!3.11e-08!169;UBERON:0005911!3.22e-08!82;UBERON:0000475!3.78e-08!365;UBERON:0001048!5.29e-08!168;UBERON:0003104!2.61e-07!238;UBERON:0009142!2.61e-07!238;UBERON:0004872!3.29e-07!84;UBERON:0004573!3.94e-07!33;UBERON:0004571!3.94e-07!33;UBERON:0003100!5.12e-07!41;UBERON:0001007!6.85e-07!155;UBERON:0001555!6.85e-07!155;UBERON:0007026!6.85e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.09e-07;33!UBERON:0004571;3.09e-07;33!UBERON:0001637;5.68e-07;42!UBERON:0003509;5.68e-07;42!UBERON:0004572;5.68e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,4.15e-11,199;UBERON:0003914,8.27e-11,117;UBERON:0001637,3.04e-09,42;UBERON:0003509,3.04e-09,42;UBERON:0004572,3.04e-09,42;UBERON:0005911,6.15e-08,82;UBERON:0004573,7.28e-08,33;UBERON:0004571,7.28e-08,33;UBERON:0004119,1.77e-07,160;UBERON:0000925,1.77e-07,160;UBERON:0006595,1.77e-07,160;UBERON:0004872,4.03e-07,83;UBERON:0003100,4.37e-07,41;UBERON:0001048,6.04e-07,160 | |||
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| ||
|short_description=p2@AMIGO2 | |||
}} | }} |
Latest revision as of 12:06, 18 September 2015
Short description: | p2@AMIGO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AMIGO2_5end |
Coexpression cluster: | NA |
Association with transcript: | 90bp_to_ENST00000550413_5end |
EntrezGene: | AMIGO2 |
HGNC: | 24073 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.83e-11 | 253 |
endo-epithelial cell | 9.65e-11 | 42 |
vascular associated smooth muscle cell | 1.99e-09 | 32 |
endodermal cell | 2.61e-08 | 58 |
smooth muscle cell | 4.84e-07 | 43 |
smooth muscle myoblast | 4.84e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 4.15e-11 | 199 |
epithelial tube | 8.27e-11 | 117 |
artery | 3.04e-09 | 42 |
arterial blood vessel | 3.04e-09 | 42 |
arterial system | 3.04e-09 | 42 |
endo-epithelium | 6.15e-08 | 82 |
systemic artery | 7.28e-08 | 33 |
systemic arterial system | 7.28e-08 | 33 |
endoderm-derived structure | 1.77e-07 | 160 |
endoderm | 1.77e-07 | 160 |
presumptive endoderm | 1.77e-07 | 160 |
splanchnic layer of lateral plate mesoderm | 4.03e-07 | 83 |
female organism | 4.37e-07 | 41 |
primordium | 6.04e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 7.85e-09 | 27 |
reproductive organ cancer | 2.31e-08 | 29 |
ovarian cancer | 3.66e-07 | 14 |