FFCP PHASE1:Hg19::chr1:156252590..156252637,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23381 | |EntrezGene=23381 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24644 | |HGNC=24644 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UPR3,Q5SZX1 | |UniProt=Q9UPR3,Q5SZX1 | ||
|association_with_transcript=0bp_to_ENST00000361813,ENST00000368267,NM_015327,uc001foc.3_5end | |association_with_transcript=0bp_to_ENST00000361813,ENST00000368267,NM_015327,uc001foc.3_5end | ||
|cluster_id=chr1:156252590..156252637,- | |||
|description=CAGE_peak_1_at_SMG5_5end | |description=CAGE_peak_1_at_SMG5_5end | ||
|id=chr1:156252590..156252637,- | |id=chr1:156252590..156252637,- | ||
|ontology_enrichment_celltype=CL:0000066!4.48e-21!254 | |ontology_enrichment_celltype=CL:0000066!4.48e-21!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.06e-21,253;CL:0000223,5.38e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.10e-18!235;DOID:14566!2.28e-18!239;DOID:0050687!8.09e-15!143;DOID:305!3.11e-13!106;DOID:0050686!1.81e-11!137 | |ontology_enrichment_disease=DOID:162!1.10e-18!235;DOID:14566!2.28e-18!239;DOID:0050687!8.09e-15!143;DOID:305!3.11e-13!106;DOID:0050686!1.81e-11!137 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.10e-18,235;DOID:14566,2.28e-18,239;DOID:0050687,8.09e-15,143;DOID:305,3.11e-13,106;DOID:0050686,1.81e-11,137 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.25e-08!94;UBERON:0001016!1.25e-08!94;UBERON:0001049!1.25e-07!57;UBERON:0005068!1.25e-07!57;UBERON:0006241!1.25e-07!57;UBERON:0007135!1.25e-07!57;UBERON:0000025!2.26e-07!194;UBERON:0000466!2.64e-07!126;UBERON:0005177!2.87e-07!107;UBERON:0002346!3.81e-07!90;UBERON:0005743!4.78e-07!86;UBERON:0003075!6.68e-07!86;UBERON:0007284!6.68e-07!86;UBERON:0000955!9.07e-07!69;UBERON:0006238!9.07e-07!69 | |ontology_enrichment_uberon=UBERON:0000073!1.25e-08!94;UBERON:0001016!1.25e-08!94;UBERON:0001049!1.25e-07!57;UBERON:0005068!1.25e-07!57;UBERON:0006241!1.25e-07!57;UBERON:0007135!1.25e-07!57;UBERON:0000025!2.26e-07!194;UBERON:0000466!2.64e-07!126;UBERON:0005177!2.87e-07!107;UBERON:0002346!3.81e-07!90;UBERON:0005743!4.78e-07!86;UBERON:0003075!6.68e-07!86;UBERON:0007284!6.68e-07!86;UBERON:0000955!9.07e-07!69;UBERON:0006238!9.07e-07!69 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.91e-08,89;UBERON:0005177,6.51e-08,101;UBERON:0010371,6.52e-08,104;UBERON:0001049,1.05e-07,56;UBERON:0005068,1.05e-07,56;UBERON:0006241,1.05e-07,56;UBERON:0007135,1.05e-07,56;UBERON:0000025,1.77e-07,192;UBERON:0002346,1.81e-07,86;UBERON:0003075,3.15e-07,82;UBERON:0007284,3.15e-07,82;UBERON:0000073,5.62e-07,53;UBERON:0002616,5.62e-07,53;UBERON:0009569,7.26e-07,112;UBERON:0000955,8.07e-07,68;UBERON:0006238,8.07e-07,68 | |||
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| ||
|short_description=p1@SMG5 | |short_description=p1@SMG5 | ||
}} | }} |
Latest revision as of 15:30, 17 September 2015
Short description: | p1@SMG5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMG5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000361813, ENST00000368267, NM_015327, uc001foc.3_5end |
EntrezGene: | SMG5 |
HGNC: | 24644 |
UniProt: | Q9UPR3Q5SZX1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.06e-21 | 253 |
endodermal cell | 5.38e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.91e-08 | 89 |
trunk region element | 6.51e-08 | 101 |
ecto-epithelium | 6.52e-08 | 104 |
neural tube | 1.05e-07 | 56 |
neural rod | 1.05e-07 | 56 |
future spinal cord | 1.05e-07 | 56 |
neural keel | 1.05e-07 | 56 |
tube | 1.77e-07 | 192 |
neurectoderm | 1.81e-07 | 86 |
neural plate | 3.15e-07 | 82 |
presumptive neural plate | 3.15e-07 | 82 |
regional part of nervous system | 5.62e-07 | 53 |
regional part of brain | 5.62e-07 | 53 |
subdivision of trunk | 7.26e-07 | 112 |
brain | 8.07e-07 | 68 |
future brain | 8.07e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.10e-18 | 235 |
disease of cellular proliferation | 2.28e-18 | 239 |
cell type cancer | 8.09e-15 | 143 |
carcinoma | 3.11e-13 | 106 |
organ system cancer | 1.81e-11 | 137 |