FFCP PHASE1:Hg19::chr1:156308018..156308101,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7203 | |EntrezGene=7203 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1616 | |HGNC=1616 | ||
|TSSclassifier=strong | |||
|UniProt=E9PRN0,P49368,E9PRM9,B4DUR8,E9PM09,E9PRC8,E9PQ35 | |UniProt=E9PRN0,P49368,E9PRM9,B4DUR8,E9PM09,E9PRC8,E9PQ35 | ||
|association_with_transcript=0bp_to_ENST00000368256,ENST00000368258,ENST00000368259,ENST00000368261,ENST00000368262,ENST00000472765,ENST00000478640,ENST00000496684,ENST00000533194_5end | |association_with_transcript=0bp_to_ENST00000368256,ENST00000368258,ENST00000368259,ENST00000368261,ENST00000368262,ENST00000472765,ENST00000478640,ENST00000496684,ENST00000533194_5end | ||
|cluster_id=chr1:156308018..156308101,- | |||
|coexpression_cluster_id=C3873 | |||
|description=CAGE_peak_1_at_CCT3_5end | |description=CAGE_peak_1_at_CCT3_5end | ||
|id=chr1:156308018..156308101,- | |id=chr1:156308018..156308101,- | ||
|ontology_enrichment_celltype=CL:0000066!4.90e-27!254;CL:0002321!1.32e-23!248;CL:0000220!6.20e-23!246;CL:0000548!1.55e-21!679;CL:0000004!1.55e-21!679;CL:0000255!1.55e-21!679;CL:0000012!7.81e-21!682;CL:0000055!4.33e-13!180;CL:0000003!4.31e-11!722;CL:0000222!1.61e-10!119;CL:0000076!2.65e-10!62;CL:0000221!1.41e-08!71;CL:0000144!5.22e-08!625;CL:0002139!1.90e-07!24;CL:0000333!7.21e-07!41;CL:0000071!8.64e-07!18;CL:0002546!8.64e-07!18 | |ontology_enrichment_celltype=CL:0000066!4.90e-27!254;CL:0002321!1.32e-23!248;CL:0000220!6.20e-23!246;CL:0000548!1.55e-21!679;CL:0000004!1.55e-21!679;CL:0000255!1.55e-21!679;CL:0000012!7.81e-21!682;CL:0000055!4.33e-13!180;CL:0000003!4.31e-11!722;CL:0000222!1.61e-10!119;CL:0000076!2.65e-10!62;CL:0000221!1.41e-08!71;CL:0000144!5.22e-08!625;CL:0002139!1.90e-07!24;CL:0000333!7.21e-07!41;CL:0000071!8.64e-07!18;CL:0002546!8.64e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.93e-07;24!CL:0000071;8.78e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.21e-27,253;CL:0002321,1.77e-23,250;CL:0000076,2.16e-10,63;CL:0000222,2.23e-10,121;CL:0000221,1.13e-08,72;CL:0002139,1.90e-07,24;CL:0000333,7.21e-07,41;CL:0000071,8.64e-07,18;CL:0002546,8.64e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;8.78e-07;18 | |||
|ontology_enrichment_disease=DOID:14566!9.99e-35!239;DOID:162!2.49e-33!235;DOID:0050687!3.23e-19!143;DOID:305!7.59e-16!106;DOID:0050686!1.44e-13!137;DOID:2531!6.68e-08!51;DOID:0060083!6.68e-08!51 | |ontology_enrichment_disease=DOID:14566!9.99e-35!239;DOID:162!2.49e-33!235;DOID:0050687!3.23e-19!143;DOID:305!7.59e-16!106;DOID:0050686!1.44e-13!137;DOID:2531!6.68e-08!51;DOID:0060083!6.68e-08!51 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,9.99e-35,239;DOID:162,2.49e-33,235;DOID:0050687,3.23e-19,143;DOID:305,7.59e-16,106;DOID:0050686,1.44e-13,137;DOID:2531,6.68e-08,51;DOID:0060083,6.68e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0000055!1.82e-09!69;UBERON:0001637!2.04e-09!42;UBERON:0003509!2.04e-09!42;UBERON:0004572!2.04e-09!42;UBERON:0002049!4.25e-09!79;UBERON:0007798!4.25e-09!79;UBERON:0000490!1.17e-08!138;UBERON:0001981!1.61e-08!60;UBERON:0007500!1.61e-08!60;UBERON:0004537!1.61e-08!60;UBERON:0006965!1.61e-08!60;UBERON:0003104!3.90e-08!238;UBERON:0009142!3.90e-08!238;UBERON:0000487!7.13e-08!22;UBERON:0000072!1.23e-07!46;UBERON:0008947!1.47e-07!38;UBERON:0003258!1.47e-07!38;UBERON:0001737!1.98e-07!9;UBERON:0003914!3.80e-07!118;UBERON:0006914!4.32e-07!25;UBERON:0004872!5.61e-07!84;UBERON:0001986!8.64e-07!18;UBERON:0004638!8.64e-07!18;UBERON:0004852!8.64e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;7.24e-08;22!UBERON:0000072;8.76e-08;37!UBERON:0000490;1.78e-07;33!UBERON:0001737;1.98e-07;9!UBERON:0001557;1.98e-07;9!UBERON:0001637;2.69e-07;42!UBERON:0003509;2.69e-07;42!UBERON:0004572;2.69e-07;42!UBERON:0006914;4.37e-07;25!UBERON:0004638;8.78e-07;18!UBERON:0001986;8.78e-07;18!UBERON:0004852;8.78e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,7.32e-10,68;UBERON:0000490,1.72e-09,148;UBERON:0002049,1.88e-09,78;UBERON:0007798,1.88e-09,78;UBERON:0001637,2.04e-09,42;UBERON:0003509,2.04e-09,42;UBERON:0004572,2.04e-09,42;UBERON:0007500,6.38e-09,59;UBERON:0001981,6.38e-09,59;UBERON:0004537,6.38e-09,59;UBERON:0006965,6.38e-09,59;UBERON:0000487,7.13e-08,22;UBERON:0008947,1.47e-07,38;UBERON:0003258,1.47e-07,38;UBERON:0001737,1.98e-07,9;UBERON:0003914,2.27e-07,117;UBERON:0004872,2.95e-07,83;UBERON:0000072,3.08e-07,47;UBERON:0006914,4.32e-07,25;UBERON:0004638,8.64e-07,18;UBERON:0001986,8.64e-07,18;UBERON:0004852,8.64e-07,18 | |||
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|phase1_expression=154.063265621432,137.666636861902,153.358391656417,106.077696254318,107.717623756976,81.1274827413343,225.436891569796,341.128731650489,351.033484300583,291.440448690789,92.1097541723604,161.646615376327,173.294904696094,225.007229681365,129.576373909615,144.549906487132,166.343689734618,180.386592325681,203.467977095641,187.020887218641,125.868426497704,146.696809651745,191.778111377808,198.878539630901,182.036827412464,258.124484616579,304.100583322599,295.795116176807,38.1563348543437,57.1905803164847,39.6329275689155,220.661093874943,243.675588291604,156.405946300551,338.454199335338,323.292834676397,125.954588474649,44.3196326825502,32.8892893851032,33.2026632195253,68.7420505916568,82.5928848348398,80.106001534232,36.0587632173321,42.6999816368355,27.654582975411,34.1670684251356,33.7157668177897,39.023002732783,24.1661609550606,33.044731142254,30.2697254257389,28.958637181876,47.7658665852031,24.3767675869815,32.5659247408706,42.8462655590818,40.6749506845603,24.1806274973013,32.7347607617615,33.2455305415501,19.791078011203,35.9034583718937,25.9997097824943,17.7027635563436,35.7452691555418,39.8606239357168,27.1348558477283,28.6815605131111,33.8814597739982,32.6915731422019,38.3008741427067,30.3803891943249,66.9679257608855,54.2140964910861,73.7998432189483,56.6136300978335,45.5035985309764,47.5747736623357,63.8428545980397,57.288003033338,71.4216841219719,121.437408678313,98.3049500271837,90.7299438940826,88.333156071267,100.499392746039,102.880686751852,105.767179645578,97.3134829626071,54.6444450345071,49.3279239071589,56.9587109906591,79.3027971474155,41.4776336606337,163.034748475773,72.5859051720044,46.7682807671506,59.6244347098577,80.5838907783068,66.814064659886,69.1233796372711,64.2928203746107,72.7510283460183,60.6888169398165,59.5926176429941,60.9308693471285,91.072928324955,93.2525522004327,83.2055797294601,91.7482059049017,71.0017560050879,71.6224100072752,59.9291454920957,80.4923533298321,92.2338049558189,72.811893784365,59.1039206230123,69.3273956133438,99.3924092691182,91.1516835398986,95.0452044448374,64.8978763225201,66.4250511891431,76.207743196931,78.8468249306576,65.6902397536837,64.3125510886896,38.5113881928251,52.4264342055732,60.9517165784904,195.173950173758,187.574378224459,148.912930782441,182.9883373821,152.813077503669,191.663913239315,88.5675463950797,224.236586313169,239.024290464644,219.059955518656,130.258690582475,166.482946749692,229.515570083562,105.477902937772,99.9504692097794,100.383260191743,65.1079404353584,82.3672671523384,40.8603251462521,361.94634381477,326.889146140327,274.588136771607,273.609043891221,294.908103655564,272.091743478727,345.468679685348,258.416759169329,214.527056400086,164.013100254688,234.849491874633,307.910202815998,216.483045045226,272.438342536289,217.928183980193,278.347253061477,166.600794488618,211.596971828162,314.299106805061,388.249654763365,289.275553666113,15.8136500923276,19.3890132074163,249.881891877672,118.776296455181,275.294732358796,259.654403574722,185.296457003734,188.328910947328,255.10830806475,276.479898939936,156.140558148062,206.644127505445,182.398249982358,212.337012144383,169.520318962323,143.46780519552,186.98850260337,316.218157829115,379.363761327059,297.701771659188,222.068636935359,203.959909903846,211.238013280182,224.773742551637,235.596220603971,139.799781930811,110.484265727231,93.9614331258516,183.852595111481,112.823048265149,254.692540412502,193.182994682313,236.335690508008,137.838972956583,178.06940935923,92.9973584631834,316.702655382779,205.939301770814,123.863285514769,171.029044235766,234.071054945834,153.239110977559,176.741410471302,137.726473685376,232.236233163982,161.842865572751,219.112516043891,168.819514109977,96.5026959208307,168.629556445392,175.812411407232,221.107012372876,242.928892426264,219.01513483444,253.822066919268,272.367285787386,283.216114903014,277.935911343888,196.437699254127,234.658391314334,256.214106071233,173.658980886096,122.859019194841,190.626191466423,188.997746709015,210.788808647519,521.732988175712,496.144742899853,518.896747339137,560.624263398758,477.809620894647,521.52082080619,564.943181191089,555.306746304729,534.413800998536,169.037599109044,79.9378110679641,207.021727699694,98.4958366283131,81.1232222859717,110.076648267894,119.339561149644,165.548662280494,182.145877482351,240.023366607637,340.884386479191,216.935383787206,256.952053484128,220.916030148252,242.727187456192,140.391196012743,314.642325615096,178.300962851668,183.274971702118,254.08494805949,250.475162303946,211.752871437108,187.278442316348,179.423607877828,102.18005752627,132.680418333948,102.406870816934,306.509637136761,179.572895044581,238.891038853421,279.333032310184,235.413490196309,304.789229936343,225.147099718446,84.9667388227631,49.3440914987038,42.3712663045867,46.835942801187,220.845676348164,240.652708101715,229.746196531692,241.212148892014,241.747435345514,225.557636440782,168.923421684672,210.582176400587,197.053951112643,272.231716967366,176.455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207.407814520192 | ||
|short_description=p1@CCT3 | |short_description=p1@CCT3 | ||
}} | }} |
Latest revision as of 15:39, 17 September 2015
Short description: | p1@CCT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCT3_5end |
Coexpression cluster: | C3873_neuroblastoma_nonsmall_teratocarcinoma_acute_neuroectodermal_medulloblastoma_small |
Association with transcript: | 0bp_to_ENST00000368256, ENST00000368258, ENST00000368259, ENST00000368261, ENST00000368262, ENST00000472765, ENST00000478640, ENST00000496684, ENST00000533194_5end |
EntrezGene: | CCT3 |
HGNC: | 1616 |
UniProt: | E9PRN0P49368E9PRM9B4DUR8E9PM09E9PRC8E9PQ35 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.21e-27 | 253 |
embryonic cell | 1.77e-23 | 250 |
squamous epithelial cell | 2.16e-10 | 63 |
mesodermal cell | 2.23e-10 | 121 |
ectodermal cell | 1.13e-08 | 72 |
endothelial cell of vascular tree | 1.90e-07 | 24 |
migratory neural crest cell | 7.21e-07 | 41 |
blood vessel endothelial cell | 8.64e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.64e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
vessel | 7.32e-10 | 68 |
unilaminar epithelium | 1.72e-09 | 148 |
vasculature | 1.88e-09 | 78 |
vascular system | 1.88e-09 | 78 |
artery | 2.04e-09 | 42 |
arterial blood vessel | 2.04e-09 | 42 |
arterial system | 2.04e-09 | 42 |
epithelial tube open at both ends | 6.38e-09 | 59 |
blood vessel | 6.38e-09 | 59 |
blood vasculature | 6.38e-09 | 59 |
vascular cord | 6.38e-09 | 59 |
simple squamous epithelium | 7.13e-08 | 22 |
respiratory primordium | 1.47e-07 | 38 |
endoderm of foregut | 1.47e-07 | 38 |
larynx | 1.98e-07 | 9 |
epithelial tube | 2.27e-07 | 117 |
splanchnic layer of lateral plate mesoderm | 2.95e-07 | 83 |
segment of respiratory tract | 3.08e-07 | 47 |
squamous epithelium | 4.32e-07 | 25 |
blood vessel endothelium | 8.64e-07 | 18 |
endothelium | 8.64e-07 | 18 |
cardiovascular system endothelium | 8.64e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 9.99e-35 | 239 |
cancer | 2.49e-33 | 235 |
cell type cancer | 3.23e-19 | 143 |
carcinoma | 7.59e-16 | 106 |
organ system cancer | 1.44e-13 | 137 |
hematologic cancer | 6.68e-08 | 51 |
immune system cancer | 6.68e-08 | 51 |