FFCP PHASE1:Hg19::chr1:177939057..177939069,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89866 | |EntrezGene=89866 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30301 | |HGNC=30301 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000486567_5end | |association_with_transcript=0bp_to_ENST00000486567_5end | ||
|cluster_id=chr1:177939057..177939069,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_8_at_SEC16B_5end | |description=CAGE_peak_8_at_SEC16B_5end | ||
|id=chr1:177939057..177939069,- | |id=chr1:177939057..177939069,- | ||
|ontology_enrichment_celltype=CL:0000181!1.94e-13!12;CL:0000417!1.94e-13!12;CL:0000668!1.94e-13!12;CL:0000414!1.94e-13!12;CL:0000412!1.94e-13!12;CL:0000182!1.94e-13!12;CL:0002563!6.33e-11!4 | |ontology_enrichment_celltype=CL:0000181!1.94e-13!12;CL:0000417!1.94e-13!12;CL:0000668!1.94e-13!12;CL:0000414!1.94e-13!12;CL:0000412!1.94e-13!12;CL:0000182!1.94e-13!12;CL:0002563!6.33e-11!4 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.48e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.55e-09,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.20e-10;11!UBERON:0009497;1.50e-08;13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009854!1.95e-20!23;UBERON:0009856!5.22e-18!26;UBERON:0000160!4.54e-17!27;UBERON:0008835!7.05e-16!22;UBERON:0003894!7.05e-16!22;UBERON:0007499!6.27e-14!25;UBERON:0009497!6.27e-14!25;UBERON:0000015!6.27e-14!25;UBERON:0002423!6.27e-14!25;UBERON:0006235!6.27e-14!25;UBERON:0004161!6.27e-14!25;UBERON:0005409!3.97e-13!35;UBERON:0002107!5.20e-13!19;UBERON:0006925!5.20e-13!19;UBERON:0008836!5.20e-13!19;UBERON:0001154!3.63e-11!1;UBERON:0001153!3.63e-11!1;UBERON:0004921!4.88e-11!129;UBERON:0004185!4.88e-11!129;UBERON:0001242!6.33e-11!4;UBERON:0001262!6.33e-11!4;UBERON:0004786!6.33e-11!4;UBERON:0004808!6.33e-11!4;UBERON:0001277!6.33e-11!4;UBERON:0003929!7.76e-11!54;UBERON:0001155!1.30e-10!9;UBERON:0005057!1.77e-09!26;UBERON:0003350!6.44e-09!5;UBERON:0001007!7.43e-09!155;UBERON:0001555!7.43e-09!155;UBERON:0007026!7.43e-09!155;UBERON:0004907!7.86e-09!5;UBERON:0000059!8.89e-09!11;UBERON:0004119!5.90e-08!169;UBERON:0000925!5.90e-08!169;UBERON:0006595!5.90e-08!169;UBERON:0002365!6.31e-08!31;UBERON:0002330!6.31e-08!31;UBERON:0002368!5.30e-07!35;UBERON:0005911!8.29e-07!82;UBERON:0002108!9.53e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;2.98e-45;4!UBERON:0000160;1.38e-22;17!UBERON:0005409;8.44e-18;22!UBERON:0002107;2.28e-12;19!UBERON:0006925;2.28e-12;19!UBERON:0004921;2.07e-10;33!UBERON:0002114;1.19e-09;2!UBERON:0002423;1.46e-09;25!UBERON:0001007;2.85e-09;81!UBERON:0002365;4.48e-08;31!UBERON:0002330;4.48e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,2.56e-45,4;UBERON:0000160,1.30e-22,17;UBERON:0005409,8.00e-16,25;UBERON:0002107,2.42e-12,19;UBERON:0006925,2.42e-12,19;UBERON:0008836,2.42e-12,19;UBERON:0008835,9.38e-11,22;UBERON:0003894,9.38e-11,22;UBERON:0009854,2.57e-10,23;UBERON:0004921,3.10e-10,118;UBERON:0002114,1.19e-09,2;UBERON:0007499,1.52e-09,25;UBERON:0009497,1.52e-09,25;UBERON:0000015,1.52e-09,25;UBERON:0002423,1.52e-09,25;UBERON:0006235,1.52e-09,25;UBERON:0004161,1.52e-09,25;UBERON:0009856,3.35e-09,26;UBERON:0001007,2.49e-08,145;UBERON:0001555,2.49e-08,145;UBERON:0007026,2.49e-08,145;UBERON:0002365,8.09e-08,31;UBERON:0002330,8.09e-08,31;UBERON:0004119,1.52e-07,160;UBERON:0000925,1.52e-07,160;UBERON:0006595,1.52e-07,160;UBERON:0002368,5.41e-07,35;UBERON:0011216,6.23e-07,223 | |||
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|short_description=p8@SEC16B | |short_description=p8@SEC16B | ||
}} | }} |
Latest revision as of 21:02, 18 September 2015
Short description: | p8@SEC16B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SEC16B_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000486567_5end |
EntrezGene: | SEC16B |
HGNC: | 30301 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.55e-09 | 12 |
Ontology term | p-value | n |
---|---|---|
small intestine | 2.56e-45 | 4 |
intestine | 1.30e-22 | 17 |
gastrointestinal system | 8.00e-16 | 25 |
liver | 2.42e-12 | 19 |
digestive gland | 2.42e-12 | 19 |
liver bud | 2.42e-12 | 19 |
hepatic diverticulum | 9.38e-11 | 22 |
liver primordium | 9.38e-11 | 22 |
digestive tract diverticulum | 2.57e-10 | 23 |
subdivision of digestive tract | 3.10e-10 | 118 |
duodenum | 1.19e-09 | 2 |
epithelial sac | 1.52e-09 | 25 |
epithelium of foregut-midgut junction | 1.52e-09 | 25 |
anatomical boundary | 1.52e-09 | 25 |
hepatobiliary system | 1.52e-09 | 25 |
foregut-midgut junction | 1.52e-09 | 25 |
septum transversum | 1.52e-09 | 25 |
sac | 3.35e-09 | 26 |
digestive system | 2.49e-08 | 145 |
digestive tract | 2.49e-08 | 145 |
primitive gut | 2.49e-08 | 145 |
exocrine gland | 8.09e-08 | 31 |
exocrine system | 8.09e-08 | 31 |
endoderm-derived structure | 1.52e-07 | 160 |
endoderm | 1.52e-07 | 160 |
presumptive endoderm | 1.52e-07 | 160 |
endocrine gland | 5.41e-07 | 35 |
organ system subdivision | 6.23e-07 | 223 |