FFCP PHASE1:Hg19::chr5:168727941..168727995,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6586 | |EntrezGene=6586 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11087 | |HGNC=11087 | ||
|TSSclassifier=strong | |||
|UniProt=O75094 | |UniProt=O75094 | ||
|association_with_transcript=137bp_to_ENST00000519560,NM_003062,uc003mab.2,uc010jjg.2,uc010jji.2_5end | |association_with_transcript=137bp_to_ENST00000519560,NM_003062,uc003mab.2,uc010jjg.2,uc010jji.2_5end | ||
|cluster_id=chr5:168727941..168727995,- | |||
|coexpression_cluster_id=C859 | |||
|description=CAGE_peak_3_at_SLIT3_5end | |description=CAGE_peak_3_at_SLIT3_5end | ||
|id=chr5:168727941..168727995,- | |id=chr5:168727941..168727995,- | ||
|ontology_enrichment_celltype=CL:0000055!2.38e-19!180;CL:0000057!3.05e-17!75;CL:0000136!2.02e-09!15;CL:0002620!3.90e-08!23;CL:0000359!2.05e-07!32 | |ontology_enrichment_celltype=CL:0000055!2.38e-19!180;CL:0000057!3.05e-17!75;CL:0000136!2.02e-09!15;CL:0002620!3.90e-08!23;CL:0000359!2.05e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.85e-09;13!CL:0000359;1.27e-07;32!CL:0002620;2.45e-07;23!CL:0002334;3.21e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.46e-17,76;CL:0000136,1.33e-10,15;CL:0000359,2.42e-08,32;CL:0002620,2.83e-07,23;CL:0002334,3.23e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.93e-17!365;UBERON:0003102!2.84e-10!95;UBERON:0000481!1.07e-09!347;UBERON:0000468!1.09e-09!659;UBERON:0002199!4.41e-09!45;UBERON:0002416!4.41e-09!45;UBERON:0000486!1.38e-08!82;UBERON:0004872!1.88e-08!84;UBERON:0000914!7.07e-08!83;UBERON:0002329!7.07e-08!83;UBERON:0003077!7.07e-08!83;UBERON:0003059!7.07e-08!83;UBERON:0007282!7.07e-08!83;UBERON:0009618!7.07e-08!83;UBERON:0007285!7.07e-08!83;UBERON:0000948!1.15e-07!24;UBERON:0005498!1.15e-07!24;UBERON:0004140!1.15e-07!24;UBERON:0009881!1.15e-07!24;UBERON:0004141!1.15e-07!24;UBERON:0003084!1.15e-07!24;UBERON:0007005!1.15e-07!24;UBERON:0004139!1.15e-07!24;UBERON:0004291!1.15e-07!24;UBERON:0000483!1.31e-07!309;UBERON:0000467!1.61e-07!625;UBERON:0004290!1.79e-07!70;UBERON:0002097!1.82e-07!40;UBERON:0007100!1.86e-07!27;UBERON:0000480!2.29e-07!626;UBERON:0001637!2.54e-07!42;UBERON:0003509!2.54e-07!42;UBERON:0004572!2.54e-07!42;UBERON:0007023!3.89e-07!115;UBERON:0000119!4.12e-07!312;UBERON:0004573!5.75e-07!33;UBERON:0004571!5.75e-07!33;UBERON:0002385!7.77e-07!63;UBERON:0001015!7.77e-07!63;UBERON:0000383!7.77e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;5.39e-08;22!UBERON:0004573;3.55e-07;33!UBERON:0004571;3.55e-07;33!UBERON:0002199;7.50e-07;46!UBERON:0002416;7.50e-07;46!UBERON:0007100;8.35e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,1.83e-09,83;UBERON:0002199,1.98e-09,46;UBERON:0002416,1.98e-09,46;UBERON:0003102,1.49e-08,99;UBERON:0004573,4.62e-08,33;UBERON:0004571,4.62e-08,33;UBERON:0001637,5.93e-08,42;UBERON:0003509,5.93e-08,42;UBERON:0004572,5.93e-08,42;UBERON:0000948,7.66e-08,24;UBERON:0005498,7.66e-08,24;UBERON:0004140,7.66e-08,24;UBERON:0009881,7.66e-08,24;UBERON:0004141,7.66e-08,24;UBERON:0003084,7.66e-08,24;UBERON:0007005,7.66e-08,24;UBERON:0004139,7.66e-08,24;UBERON:0004291,7.66e-08,24;UBERON:0002097,1.25e-07,41;UBERON:0007100,9.46e-07,27 | |||
|phase1_expression=22.7097974088196,26.5484649624819,16.9145284915165,34.0249214400643,21.0071714380825,36.6382180122155,5.06599756336621,5.68547886084148,31.0810897557808,0.491467873003018,0,2.40285509343189,3.16520373874144,0,0,0,1.20538905604795,0.730310090387373,2.92759679274304,1.35433163884467,2.44800829493104,6.89600387251793,1.71741592278634,2.46373965131192,7.28147309649856,0,0,0,0,0,0,0.919421224478927,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,29.2568239576754,4.02420515822182,7.1603034632377,2.53007406669196,2.00535164254356,3.62116297402059,0,1.45990461090791,0.472674085820339,0.665188192387692,1.22968699970376,3.33996642519167,0.728590576585084,0,0,0,0,0,0,0,0,0,0,1.13061588384802,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,28.3274012466332,13.6760952597746,17.0807843249052,121.331890576748,15.6054088167277,25.7911696065461,0,3.94668077467456,16.8053959115874,0.269421344139376,1.30769522490767,0.302714855289863,0,9.13853584151807,0.624320153660641,0.570471821544449,0.896692083310806,3.05329696473789,3.0755859429945,2.52811452064047,0.408308342509787,1.10550885580591,2.16984140469107,5.94001428641027,2.96720315134268,0,0,2.52504170931099,3.75355559615892,1.10825646193673,3.95079858792754,2.75839016219118,6.15976041517047,0.794025282120147,17.0420153904419,61.2909705909289,34.332967987849,5.70173082560364,12.3663035086127,14.9431513226465,14.517114793864,27.0042131586026,17.5386609290158,7.32057945307932,39.5814564161887,74.6804782502911,11.7153165530483,3.92933183087797,7.12154487704048,0.966304265816484,0.545492241181669,0.860413786167011,0,0,0.813357600086629,0.932949495138334,0.252320850875628,0,1.56449532329816,14.1513006402435,4.14404764057442,2.78620756819187,7.21879481669586,0.118306800039844,0,0,0,0,0,0,0,0,0,0,9.8777762719536,5.88034845542168,0,0,0,0,0,0.857839051492628,5.5972645558399,1.1240175325762,0.301586917234893,0.185176890317059,13.032332212413,6.23960871167747,1.44331342025273,2.08674728955138,0.234817388471643,0,0,0,0,0,0,0,0,0,1.84780341018745,0.141775097242386,1.52249488594842,1.45316969256981,7.28427090413901,0,0,0.621984346622316,0.288239906833923,0.6312121671319,0,0,0,6.84289784090821,0.308482478109971,0,0,0,0,0,5.68795549334222,0,0,0.797814349754612,0,1.54324424557285,0,1.0656887160644,1.42977993658148,29.8441882965294,0.823240336780769,0,0.355391948742546,0.791951872933429,76.5656017731349,23.5314033822079,48.6868467056618,0,0,0,0.958499421966331,3.44585807502342,0,0.144781306667579,0.410952645100767,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.49076596687656,0,0.542530047399471,5.19927153827018,4.28229573113188,3.46945313074656,4.80279801470124,4.21324539618807,4.5481500811197,4.1389228517002,3.98535359121262,2.58116835958384,3.38846096425523,1.37060810223918,0.686286847621712,0,0,0,0.303127571446259,14.9791895559447,7.25736703991233,72.4474798830828,37.2912595089992,58.6579597365124,43.695449896194,45.5419451669366,22.0369871966742,40.0728779401476,1.23367755042124,11.186388694727,3.85997633264903,0,8.01851611373719,0,2.80709058424599,4.32780647998713,0,0,0,0.902399225814824,0.308061348417659,0.784349769176855,2.92278449306521,0.422206515571503,0,0,0.647747748306418,1.54227252690289,3.79325012561394,4.01351819083883,0,0.831076008928724,0.895499018888713,0,0,2.05160100093111,8.52838078819235,1.62689197332152,4.01859945426117,2.83865340936865,1.48517099857058,3.44559322797703,3.25030123018261,3.21367859688319,0.96670718292122,0.462145851343933,0.460511024178389,0.137836572484531,0.429680979473094,1.0151168573996,0.340906509664404,2.58192903375538,2.14870389969272,9.2251232335251,2.16941611240793,9.71114696213279,6.97268323945929,49.7403507992411,5.5762981612848,4.92853728281742,4.7907542728532,8.69932992075073,18.1617734721842,10.0187420719394,0,0,0,1.02359116524534,0.42793898803392,12.4099266691115,2.35484592059769,0.539617372749944,0.823611089208164,0.589062011728432,4.65019707618627,12.6808256938407,5.47635993110675,0.48763373908959,1.46228093778771,1.05650146756755,0.136499911407986,0,12.4308928282267,19.2977870241143,16.5859743810305,15.7842318691355,1.15755106853338,0.655894752046633,4.46402829317949,4.02770547529675,4.7888252430481,1.57752487424457,1.8667317792493,5.35006577221875,0,81.2764395896007,81.0065436681359,1.13841952129715,2.0996083214699,0.962221127255121,1.34060455107157,2.17781969722645,4.0481834334015,3.01353760869861,3.36942951335251,4.87773168890343,2.98640420269047,0,0,0,0,0,0,0,0,1.92283328029452,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2811298039358,0,0,0,0.47748896947538,1.18785872333055,0.307160702099232,1.9882952955326,1.1253553312841,0,0,14.9899039770875,15.7405910718345,4.97311047956066,0,0,0,10.2643063928396,0,0,0,14.0073636004446,0,2.22273980289274,0.969332746095218,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| ||
|short_description=p3@SLIT3 | |short_description=p3@SLIT3 | ||
}} | }} |
Latest revision as of 20:30, 16 September 2015
Short description: | p3@SLIT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLIT3_5end |
Coexpression cluster: | C859_Fibroblast_Synoviocyte_Preadipocyte_mesothelioma_tenocyte_Mesothelial_Smooth |
Association with transcript: | 137bp_to_ENST00000519560, NM_003062, uc003mab.2, uc010jjg.2, uc010jji.2_5end |
EntrezGene: | SLIT3 |
HGNC: | 11087 |
UniProt: | O75094 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.46e-17 | 76 |
fat cell | 1.33e-10 | 15 |
vascular associated smooth muscle cell | 2.42e-08 | 32 |
skin fibroblast | 2.83e-07 | 23 |
preadipocyte | 3.23e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 1.83e-09 | 83 |
integument | 1.98e-09 | 46 |
integumental system | 1.98e-09 | 46 |
surface structure | 1.49e-08 | 99 |
systemic artery | 4.62e-08 | 33 |
systemic arterial system | 4.62e-08 | 33 |
artery | 5.93e-08 | 42 |
arterial blood vessel | 5.93e-08 | 42 |
arterial system | 5.93e-08 | 42 |
heart | 7.66e-08 | 24 |
primitive heart tube | 7.66e-08 | 24 |
primary heart field | 7.66e-08 | 24 |
anterior lateral plate mesoderm | 7.66e-08 | 24 |
heart tube | 7.66e-08 | 24 |
heart primordium | 7.66e-08 | 24 |
cardiac mesoderm | 7.66e-08 | 24 |
cardiogenic plate | 7.66e-08 | 24 |
heart rudiment | 7.66e-08 | 24 |
skin of body | 1.25e-07 | 41 |
primary circulatory organ | 9.46e-07 | 27 |